YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116181860, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.63
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	117	0.97
Transmembrane Helix	118	139	0.88
Non-Cytoplasmic	140	146	0.69
Transmembrane Helix	147	172	0.78
Cytoplasmic	173	197	0.66
Transmembrane Helix	198	217	0.82
Non-Cytoplasmic	218	226	0.75
Transmembrane Helix	227	245	0.96
Cytoplasmic	246	254	0.77
Transmembrane Helix	255	278	0.90
Non-Cytoplasmic	279	297	0.93
Transmembrane Helix	298	321	0.88
Cytoplasmic	322	339	0.88
Transmembrane Helix	340	359	0.95
Non-Cytoplasmic	360	388	0.85
Transmembrane Helix	389	413	0.77
Cytoplasmic	414	440	0.84
Transmembrane Helix	441	460	0.93
Non-Cytoplasmic	461	468	0.85
Transmembrane Helix	469	492	0.91
Cytoplasmic	493	511	0.92
Transmembrane Helix	512	534	0.91
Non-Cytoplasmic	535	597	0.79
Transmembrane Helix	598	619	0.90
Cytoplasmic	620	665	0.63

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MADLRPKEDS FAQGSVLSMQ NASSYSRNSS TNHEQEGHPI RRWLDTFRRD PGRHVTPASV  60
   61 MHTAEDRRRA SMATRRSEDT RPSLERRGRS RGHYFDMHAA NVGTANTLLS RELKGRHLQM 120
  121 IAIGGSIGTG LFVASGKALH TGGPAAVLIA YLFVGCMLYC TVQALGELAV TFPVAGSFSA 180
  181 YSTRFLDPAW GFAMGWNYAL QWLVVLPLEI IAASITVSYW NSNLDRSIFI TVFLFAIIVI 240
  241 NLFGVKGYGE AEFVFAIIKI TAVIGFTLLG IVINIGGFPD DGYIGGRYWD NPGAFNNGFK 300
  301 GLCAVFVTAA FAFTGTELVG LAAAETANPR RSLPTAIKQV FWRITLFYIV SLTLIGLLVP 360
  361 HNHPRLLGAK SAADASASPF VIAIESAGIA ILPGVMNSVI LVAVISVGNS AVFGSSRTLA 420
  421 ALADQRQAPS ILGYVDRRGR PLVAILVASA LGLLGYLADL DAQSDVLNWL LAVSGLSSVF 480
  481 TWGSICLAHI RFRRAWHAKG RNTRQLAFRS QVGVLGSWVG LALNVLVLLA QFWTAAWPIP 540
  541 HPDPSGSGKA QTLGGGGGGM GDGEAGGPLV TGAGGVGEGS GGAAVVPISA ARDVAQNFFL 600
  601 QYLCAPIVMA FYVGYKLWFR TRVVRVHEMD VDTGRRDFNL PILISREVDE KRGMPRWKRV 660
  661 YKFLC