YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|116194816, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.54
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	49	0.85
Transmembrane Helix	50	72	0.77
Non-Cytoplasmic	73	80	0.57
Transmembrane Helix	81	104	0.81
Cytoplasmic	105	115	0.49
Transmembrane Helix	116	150	0.65
Non-Cytoplasmic	151	175	0.55
Transmembrane Helix	176	197	0.87
Cytoplasmic	198	205	0.48
Transmembrane Helix	206	229	0.84
Non-Cytoplasmic	230	245	0.53
Transmembrane Helix	246	264	0.54
Cytoplasmic	265	283	0.83
Transmembrane Helix	284	308	0.84
Non-Cytoplasmic	309	333	0.92
Transmembrane Helix	334	355	0.88
Cytoplasmic	356	374	0.83
Transmembrane Helix	375	393	0.95
Non-Cytoplasmic	394	401	0.80
Transmembrane Helix	402	424	0.91
Cytoplasmic	425	453	0.93
Transmembrane Helix	454	475	0.90
Non-Cytoplasmic	476	483	0.69
Transmembrane Helix	484	504	0.90
Cytoplasmic	505	555	0.95

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSGKPGVFRR LADKAVVESE PGLTTAQLML TNHDLKPVEP ERRQWGPWNF VGFWIADSFN  60
   61 INTWMISSSM IVGGLSWWQS WLCVWIGYAI SGCFICLTGR IGATYHIGFP VASRASFGIW 120
  121 GSLWPVFNRA AMACVWYGVQ SYIGGHCVYL MIRSIWKSWD RETIPNTFAE GSGTTTADYA 180
  181 SFFIFWFCSL PAIWFPVHQI RHLFTVKAYF VPCAGIAFLI WSVVRAGGIG PIMRQPATKE 240
  241 GSELAWEFVK GIMSSIANFA TLIVNDPDFS RFAGKPRDAL WSQLFTIPIG FGMTSFIGII 300
  301 VSSSSTVIYG GEPIWDPLDL LERFINDGGS AQRFGVFVIA AAFSLAQLGT NIAANSVSAG 360
  361 TDMTALLPRW LNIRRGGYIC AAVGLAMCPY NLLTSSNMFT TYLSAYSVFL SSIAGVMIAD 420
  421 YYLVRRGFLE VKELYDARRS GPYYFTAGWH WRAYAAYIAG ILINVVGFVG AVGATTVPIG 480
  481 ATYLYNLNFF CGFGVSAGVY WGLCRVFPIP ATSDKWMEVG DEIVDLRLAY DDRSGSQDDE 540
  541 EVDAASTVKD VGKTV