YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ggr-2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.42
Topology Confidence:	0.43
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLLVSSIFLL LYRNSPKVEA SRSEPVPIYL DNLLNAGRQV YDNQSPPVQH DKEEVTVVEL  60
   61 AMYIEGMSSF RTQTMDFQLD VYFQQFWRDP RLAHNETRRV LVKDKAVLHK MWKPDVYFAN 120
  121 ARIAEFHEVT QPNFLVWIQP DGSILYDTRI SMVVVCTLNL EKWPLDSQRC HLRILSYAYT 180
  181 TEQLVIKWKE DEPITRNPNI AMSDMHIVDL YPGLCDGNYS TGTWSCVTAE FFVKREITHH 240
  241 VMQSYVPTTL IVVISWFSFW LDVEAVPARV SLAITTLLTL STQANAARMA LPEVSYMKAI 300
  301 DVWMGACMMF VFGVMIEFTI VNYAQRQGRK WHRTDAEIVM ASSLESVKSG NAEKKPSRGD 360
  361 LGAHARHLFL RLRTNERQHL VEDPPEQIAM NDTAYDTVSQ AYSNSFSDEE AAPVVQPPQN 420
  421 EDAEAQEEVW AEQKETNLSE VWKESDPAER LAHWNEKEND ASSPLMGNGR AHVRYGAAEK 480
  481 MKNRKCNDSS RKKEKWSSAI KQIQKHKFVL FLL

Type	Start	End	Confidence
Signal Peptide	1	20	0.43
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	240	0.59
Transmembrane Helix	241	261	0.83
Cytoplasmic	262	267	0.46
Transmembrane Helix	268	287	0.69
Non-Cytoplasmic	288	301	0.56
Transmembrane Helix	302	323	0.91
Cytoplasmic	324	513	0.70