YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39380
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.78
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGDIQKGRI DMACGRFRMT ADRANVLTFT YPTQFEVNQV YLITDPQKSV DVVFLFHPFS  60
   61 TTVWLLLSLT VLVVAIVFFI LRFVEFKSTK ETESSYECIQ NSIFQVLLST FNLEIRVAKK 120
  121 STFFAFHLFS TIWLLAWFHV FIDFYTSELS GMMVVSDKRQ VPFDNFYGFI DHLRKGNYRL 180
  181 FTPSADRIPE CPHEITTSKC NAIFSEILSK HPPEYGDLMQ LNDREFVSSR KIPLVGFGWY 240
  241 PAQRISSKFS IWTEELFHSD IWLIRDFPVC PAAYIVRPTF PYLDELNEMI IKRIDNHYTP 300
  301 AYPELTLTGK PSKSSFSLNQ LSSIFLIHLL GAFVSTLFLI AELVIGKTDF LTHIVVFYRT 360
  361 LNLDYGKIFF FPINVSSSYG SYFSAELTKR HNIDSTLQTR LDNSKSLKME NG

Type	Start	End	Confidence
Non-Cytoplasmic	1	61	0.85
Transmembrane Helix	62	84	0.90
Cytoplasmic	85	122	0.93
Transmembrane Helix	123	142	0.93
Non-Cytoplasmic	143	323	0.94
Transmembrane Helix	324	345	0.90
Cytoplasmic	346	412	0.78