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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|87123261, gi|...
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.42
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTQALAGQLI QHDWFGCLSK DAQQQVLQQA QLLSFDLGQQ LVDPGVIPGR VLILLNGRAR  60
   61 LVGQSQGRLL SLGKFEAGAV LGAASLLNGR GIENLIASDT VTAAAISDEL WAELYQQEDS 120
  121 FRRWCQGQLW VSETAALIQD LQSQSVRADA TCQELLQETL QSARRVPLDS TAFEEAETAG 180
  181 RQVFLTSAWG GSNPGARITP PALPPESQPF PARLISLPSD LVERILRTPT PNTTAASTPD 240
  241 NAPDNASDGD SPTPAGPTPV SRFSPDGDWL ERLRLIRAEG VLQETLACFQ MLAQLMKLPF 300
  301 RRDAIEKVLR EMTRRGQEPT LRLCGQIAAG LGLHVSGAHV TAAMGTRLQT PTLVPWKGSF 360
  361 ALVARSNQSG LTLASPRDGI VELAPDQLEA AFPDGLDVLL LERSNATLNQ SFGPSWFWPA 420
  421 LRRHRNVLVQ VLIASFVVQL FALANPLLIQ VIIDKVITQR SLDTLQVLGI ALVAVTLLEG 480
  481 VLGSLKTFLF SETTNRIDQR LGAEVIDHLL RLPLGYFDKR PVGELGSRIS ELEKIRNFLT 540
  541 GQALTTLLDA AFSVIYIVVM LIYSWLLTLI ALAVLPIQIA LTLIGAPLFR RQYRQAAEAN 600
  601 AKTQSHLVEV LTGIQTVKSQ NVEMVSRFSW QELYATYINR SFEKTISGTV LNQTSQVLQK 660
  661 LSQLLVLWVG ATLVLSGDLT LGQLIAFRII SGYVTQPLLR LSSIWQNIQE LKVSFERLAD 720
  721 VIDTPQESDS LDKAKVPLPP IEGEVRFDNL SFRFRPDMDP VLKDINLQVK AGTFVGIVGQ 780
  781 SGSGKSTLMK LLPRLYSPDQ GRILIDGYDI DKVELYSLRR QIGIVPQDPL LFSGSISENI 840
  841 ALTQPDAGSD AIVMAAKLAD AHDFIMALPS GYSTPVGERG ASLSGGQRQR IAIARTLLSN 900
  901 PKLLVLDEAT SALDYETERR VCDNLVSALQ DCTVFFITHR LATVRRADLI VVMHDGVVAE 960
  961 IGSHDDLIKQ RGRYYALYRQ QEAG

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle