YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|229357055, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.47
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	33	0.68
Transmembrane Helix	34	53	0.88
Non-Cytoplasmic	54	60	0.59
Transmembrane Helix	61	84	0.71
Cytoplasmic	85	85	0.41
Transmembrane Helix	86	105	0.76
Non-Cytoplasmic	106	109	0.57
Transmembrane Helix	110	131	0.90
Cytoplasmic	132	137	0.68
Transmembrane Helix	138	157	0.82
Non-Cytoplasmic	158	179	0.83
Transmembrane Helix	180	202	0.90
Cytoplasmic	203	232	0.88
Transmembrane Helix	233	254	0.90
Non-Cytoplasmic	255	261	0.74
Transmembrane Helix	262	281	0.68
Cytoplasmic	282	286	0.55
Transmembrane Helix	287	307	0.78
Non-Cytoplasmic	308	311	0.51
Transmembrane Helix	312	328	0.47
Cytoplasmic	329	333	0.57

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKQGYSMSTR TMTNTTSDNR KKLLSKEWLI EQKSLIALLF LVVVVSFLNP NFFTVDNLLN  60
   61 ILRQTSVNAI IAVGMTLVIL TAGIDLSVGS VLALCGAFAA TLVAMEVPVL VAVPTALLAG 120
  121 AALGAISGII IAKGKVQAFI ATLVTMTLLR GVTMVYTDGR PISTGFTDTA DTFAWFGTGY 180
  181 TLGIPVPVWL MVVVFAGAWY LLNHTRFGRY VYAVGGNESA TRLSGINVDR VKIGVYAICG 240
  241 LLAALAGIIV TSRLSSAQPT AGMGYELDAI AAVVLGGTSL MGGKGRIMGT LIGALIIGFL 300
  301 NNALNLLDVS SYYQMIAKAV VILLAVLVDN KNK