YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|84392941, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDQNKNLIL ATVLSFIVIV VWFLLFPPPE RVDDPNAPAT GETAQSQADG TAPMTPGADT  60
   61 REGASVPSDA APASADTEEA PRLGIDTPRL AGSINLRGGR IDDLKLKDYL TSLDADATRV 120
  121 TVLRPEDQRD PFYALYGWIP VSGADAGAMP AEDTVWSVEG TPTLTPETPV TMTWENDAGL 180
  181 IFRRTVGIDT DYMFTVRQTV ENTGENPVAL RPYSVLRRHG IPSDLKKFFV LHEGLIRMSD 240
  241 GELQEESYGN LEDFDVDGRE GVPAERIEVQ ESGWTGFTDH YWMSTIIPDT AFRSTAKYFP 300
  301 GRSIFQTDAV LPAVEIAPGA SASVDTRLFA GAKEWETIKE YQNDHGVTRF LDAIDWGWFF 360
  361 FLTKPIFAVL HWLNSHIGNM GWSIIALTVL LKMVLFPLAY KSYASMAKMR ELQPEMEKIK 420
  421 ERAGDDRQKL QKEMMELYKK EKVNPASGCL PILLQIPIFF SLYKVIFVTL ELRHAPWIGW 480
  481 IHDLSAPDPS SILNLFGLLP IATPDPDSFL AIISLGVLPI LLGVSMWLQQ KLNPAPTDPT 540
  541 QQMIFAWMPW VFMFMLGTFA SGLVLYWITN NVITFMQQYA IMRSHGFKPD VFGNIRKSLT 600
  601 RKKKAEGK

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.50
Transmembrane Helix	8	26	0.95
Cytoplasmic	27	353	0.56
Transmembrane Helix	354	373	0.61
Non-Cytoplasmic	374	379	0.72
Transmembrane Helix	380	400	0.90
Cytoplasmic	401	447	0.90
Transmembrane Helix	448	467	0.77
Non-Cytoplasmic	468	507	0.65
Transmembrane Helix	508	528	0.94
Cytoplasmic	529	545	0.61
Transmembrane Helix	546	569	0.90
Non-Cytoplasmic	570	608	0.65