YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|82749150, gi\|...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.83
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKSTFSRLI SYVSKYKGYM FASLIFALIS NILIAFMPLI VGRSIDHIVA KGEVDFDGLI  60
   61 KTIIILGVIY VISALFTWLF TIVANTVAYN TVKDLRNEAL NKISSLPLKY FDKNPHGDII 120
  121 SRLTNDMDNV SDGLFQGITQ FYPGIITIIS SLVLMVSLSF KLTLVIVLMT PFCFLIASFI 180
  181 TKRSNKMFKE QQKTLGELNG YIEEIVGSQK VVRLFGYEER AQESFSGINS RLYKCGQLAQ 240
  241 FYSSLTNPAT RFVNNITYIL VGLVGGILSV LSGLSVGVIS SFLTYSTQFS QPINNITSVA 300
  301 TQLQAALASC ERIFSIIDEE PEKADSKEAE NIESCDGNVE FDNVSFSYNK KVPLIENFSV 360
  361 NIKKGSTIAI VGPTGAGKTT IVNLLMRFYD LEKGRITIDG KSINDLTRNN LRRQFGMVLQ 420
  421 DTWLFEGTIR QNIAYGKPNA TLEEVENAAK AAFIHSFIKR LPDGYDTIIT ESGGNLSEGQ 480
  481 KQLLTIARVM LIDPPILILD EATSNVDTRT ELKIQNAFLS MMKGRTSFVI AHRLSTIRDA 540
  541 DIILVMKNGK ITERGNHDEL VNKGGIYTEL YNSQFKHQL

Type	Start	End	Confidence
Cytoplasmic	1	18	0.86
Transmembrane Helix	19	41	0.92
Non-Cytoplasmic	42	61	0.80
Transmembrane Helix	62	83	0.90
Cytoplasmic	84	136	0.82
Transmembrane Helix	137	156	0.83
Non-Cytoplasmic	157	161	0.63
Transmembrane Helix	162	181	0.91
Cytoplasmic	182	257	0.97
Transmembrane Helix	258	282	0.90
Non-Cytoplasmic	283	579	0.98