YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|113883792, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.66
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.86
Transmembrane Helix	21	40	0.92
Non-Cytoplasmic	41	53	0.82
Transmembrane Helix	54	74	0.89
Cytoplasmic	75	89	0.84
Transmembrane Helix	90	111	0.94
Non-Cytoplasmic	112	152	0.95
Transmembrane Helix	153	173	0.93
Cytoplasmic	174	195	0.89
Transmembrane Helix	196	214	0.91
Non-Cytoplasmic	215	226	0.68
Transmembrane Helix	227	247	0.93
Cytoplasmic	248	257	0.81
Transmembrane Helix	258	281	0.67
Non-Cytoplasmic	282	311	0.68
Transmembrane Helix	312	329	0.69
Cytoplasmic	330	331	0.45
Transmembrane Helix	332	356	0.72
Non-Cytoplasmic	357	357	0.38
Transmembrane Helix	358	381	0.66
Cytoplasmic	382	435	0.71

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKHRSSALG RIWSSWMSVP LWLQIFVGMV LGIAVGVSLG EQASYLKPIG TLFVNTIKML  60
   61 IVPLVFCSLI VGVTSMEDTA KMGRIGFKSF AFYLCTTAIA ISLGLAVGYV VQPGAGVPLL 120
  121 QHEAVQTAKE VPSVMQTLID IVPTNPVAAL ASGQILQVIV FAVALGIALV LIGDHGKPAI 180
  181 KVFESLAEAM YKLTDMVMKL APYGVFGLMA WVAGEYGIDM LWPLIKVIIA VYIGCIIHVL 240
  241 GFYSIVLRLF AKLNPLHFFK GISNAMAVAF TTSSSAGTLP ASMKCASEYL GVNKKISSFV 300
  301 LPLGTTINMD GTALYQGVTA LFVAQAFGID LTWVDYLTII LTATLASIGT AGVPGAGLVM 360
  361 LTLVLSTVGL PLEGVALIAG IDRILDMART VVNVSGDLVA TTVIAKSEDE LDVEHYNADM 420
  421 VQSAMIAEQN AATKS