YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	UPS2_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	7	0.92
Transmembrane Helix	8	31	0.90
Cytoplasmic	32	41	0.91
Transmembrane Helix	42	64	0.88
Non-Cytoplasmic	65	81	0.89
Transmembrane Helix	82	101	0.89
Cytoplasmic	102	107	0.62
Transmembrane Helix	108	132	0.80
Non-Cytoplasmic	133	141	0.84
Transmembrane Helix	142	161	0.94
Cytoplasmic	162	229	0.98
Transmembrane Helix	230	250	0.96
Non-Cytoplasmic	251	272	0.90
Transmembrane Helix	273	295	0.94
Cytoplasmic	296	315	0.86
Transmembrane Helix	316	334	0.96
Non-Cytoplasmic	335	341	0.73
Transmembrane Helix	342	363	0.88
Cytoplasmic	364	372	0.86
Transmembrane Helix	373	393	0.96
Non-Cytoplasmic	394	398	0.80

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYLVESKGGA IACMLLALLS LGTWPAVLTL LERRGRLPQH TYLDYSITNL LAAIIIAFTF  60
   61 GQIGSTKPDS PNFITQLAQD NWPSVMFAMA GGIVLSLGNL STQYAWALVG LSVTEVITSS 120
  121 ITVVIGSTLN YFLDDKINKA EILFPGVACF LIAVCLGSAV HRSNADDNKA KLRDFETAKQ 180
  181 EASGPSTEIG TNSSKDLETN VTTKPKEGTA RFLIELENTR AIKVFGKRKI IGLAITFFAG 240
  241 LCFSLFSPAF NLATNDQWNR LKQGVPKLVV YTAFFYFSVS CFIIALILNV VFLYYPVLGL 300
  301 PKSSFKAYLN DWNGRYWAFL AGFLCGFGNG LQFMGGQAAG YAAADSVQAL PLVSTFWGVV 360
  361 LFGEYRRSSR KTYLLLFCML FMFISAVAVL MASSGHRK