YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX8_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.51
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	56	0.51
Transmembrane Helix	57	77	0.87
Non-Cytoplasmic	78	93	0.80
Transmembrane Helix	94	114	0.81
Cytoplasmic	115	126	0.77
Transmembrane Helix	127	148	0.93
Non-Cytoplasmic	149	157	0.79
Transmembrane Helix	158	178	0.87
Cytoplasmic	179	225	0.60
Transmembrane Helix	226	252	0.79
Non-Cytoplasmic	253	276	0.55
Transmembrane Helix	277	301	0.84
Cytoplasmic	302	314	0.81
Transmembrane Helix	315	337	0.86
Non-Cytoplasmic	338	353	0.77
Transmembrane Helix	354	375	0.89
Cytoplasmic	376	386	0.81
Transmembrane Helix	387	406	0.83
Non-Cytoplasmic	407	422	0.71
Transmembrane Helix	423	446	0.82
Cytoplasmic	447	756	0.76

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTSIIGAALP YKSPEKAIAS SSYSAENDSS PVDAVIFAGT SLVLGTACRY LFNGTRVPYT  60
   61 VVLLVIGIFL GSLEYGTKHN LGKLGHGIRI WNGINPDLLL AVFLPVLLFE SSFSMDVHQI 120
  121 KRCMGQMVLL AGPGVLISTF CLGALIKLTF PYNWDWKTSL LLGGLLGATD PVAVVALLKE 180
  181 LGASKKMTTL IDGESLMNDG VSVVVFQLFF KMVMGHNSDW GSIIKFLVQN SFGAVGIGLA 240
  241 FGIASVFWLK FIFNDTVAQI TVTLSASYFA YYTAQEWAGV SGILTVMILG MFFAAFARTA 300
  301 FKGDSHQSLH HFWEMAAYIA NTLVFMLSGV IIAESVLSGQ TISYKGNSWS FLFLLYLYVQ 360
  361 LSRCVVVGVL YPLLCRSGYG LDWKESIILT WSGLRGAVSL SLALSVKQSS GNSYLSSDTG 420
  421 TRFLFLTGGI VFLTLVVNGS TTQLLLHLLR MDTLTATKKR ILEYTKFEMM KTALKAFENL 480
  481 GDDEELGSAD WPTVIRHISS LKDLEGRQVN PHDGYEAGSL DPTNIMDIRI RFLNGVQAAY 540
  541 WEMLDDGRIT QCTANVLMQS VDEALDLVST SSLSDWRGLE PRVHFPNYYK FLQSKIIPHK 600
  601 LVTHLIVERL ESACYISSAF LRAHRIARQQ LHIFLGNSNI ASTVINESEV EGEEAKQFLE 660
  661 DVRDSFPQVL SVLKTRQVTH YVLNHLNGYI KNLEKVGLLE GKEVSHLHDV VQSDLKKLLR 720
  721 HPPSLKLPNV DDLITSNPLL KDRSSFRSLA IGETDA