YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	NHX6_ARATH
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	22	0.80
Transmembrane Helix	23	45	0.89
Non-Cytoplasmic	46	51	0.71
Transmembrane Helix	52	73	0.88
Cytoplasmic	74	84	0.68
Transmembrane Helix	85	104	0.82
Non-Cytoplasmic	105	116	0.69
Transmembrane Helix	117	140	0.88
Cytoplasmic	141	150	0.56
Transmembrane Helix	151	173	0.69
Non-Cytoplasmic	174	181	0.76
Transmembrane Helix	182	202	0.82
Cytoplasmic	203	218	0.87
Transmembrane Helix	219	242	0.85
Non-Cytoplasmic	243	271	0.91
Transmembrane Helix	272	292	0.91
Cytoplasmic	293	306	0.84
Transmembrane Helix	307	329	0.88
Non-Cytoplasmic	330	342	0.82
Transmembrane Helix	343	366	0.90
Cytoplasmic	367	382	0.92
Transmembrane Helix	383	403	0.90
Non-Cytoplasmic	404	411	0.80
Transmembrane Helix	412	431	0.92
Cytoplasmic	432	535	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSELQISPA IHDPQGQEKQ QQAAGVGILL QIMMLVLSFV LGHVLRRHKF YYLPEASASL  60
   61 LIGLIVGGLA NISNTETSIR TWFNFHDEFF FLFLLPPIIF QSGFSLQPKP FFSNFGAIVT 120
  121 FSVLGTFVAS MVTGLLVYLG GVMFLMYRLP FVECLMFGSL ISATDPVTVL SIFQELGSDV 180
  181 NLYALVFGES VLNDAMAISL YRTMSLVRSH SSGQNFFMVI VRFLETFVGS MSAGVGVGFT 240
  241 SAHLFKYAGL DVDNLQNLEC CLFVLFPYFS YMLAEGLSLS GIVSILFTGI VMKHYTYSNL 300
  301 SANSQRFVSA FFHLISSLAE TFVFIYMGFD IAMEKHSWSH LGFIFFSILF IVIARAANVF 360
  361 GCGYLVNLAR PAHRKIPMTH QKALWYSGLR GAMAFALALQ SVHDLPEGHG QTIFTATTAI 420
  421 VVLTVLLIGG STGTMLEALE VVGDSHDTSL GDGFEVVNSR YMTSYDDEDT PPGSGFRTKL 480
  481 REFHKSAASF TELDRNYLTP FFTSNNGDYD DEGNMEQHHE ERIPFTRRGN LNNRG