YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	MURD_COLP3
Protein type:	Globular with Signal Peptide
Type Confidence:	0.81
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTWLTAFKDK NIVVLGAGMT GLSCLRFLHA QDLSFAVNDS RPMPFANRDE QTQYENDYPK  60
   61 AKFVFGQWQQ SLISSADIII TSPGIDLVSE GITALIPENC LVIGDVELFC LVNNSRISPM 120
  121 KMLAVTGSNG KSTVVSLLAS LAKAIGVNAA LAGNIGEPIL NLLHRENVYN SQLANQPDIV 180
  181 IVELSSFQLE TLSSMHAIAA SVLNLSDDHL DRHKTLANYQ AIKQSIYPQA KIAVVSREDQ 240
  241 ASNTLVAAQE IISFGLNKPE QDCFGLQAID NKMVMMFGEQ ALISIDELPL AGMHNALNYM 300
  301 AALALGYSAG WSLSAMTENL AGFMGLAHRC QRVASEDYIQ WINDSKATNV GATLAAITGL 360
  361 VPTLTGQNKL ILIAGGDGKG ADFSALTTIL NCDVNQLITL GKDGAEIASL VSDAIQVDTL 420
  421 REAVEQAKQI AKPGDMVLLS PACASIDMFK NYQVRGEQFI AAVQAKEDSC R

Type	Start	End	Confidence
Signal Peptide	1	30	0.86
N-region	1	21
H-region	22	27
C-region	28	30
Cleavage Site	30	31
Non-Cytoplasmic	31	471	0.96