YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CAC1H_RAT
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.49
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	141	0.62
Transmembrane Helix	142	162	0.71
Non-Cytoplasmic	163	228	0.55
Transmembrane Helix	229	254	0.82
Cytoplasmic	255	363	0.85
Transmembrane Helix	364	384	0.82
Non-Cytoplasmic	385	395	0.72
Transmembrane Helix	396	419	0.93
Cytoplasmic	420	790	0.84
Transmembrane Helix	791	809	0.55
Non-Cytoplasmic	810	823	0.54
Transmembrane Helix	824	844	0.64
Cytoplasmic	845	852	0.44
Transmembrane Helix	853	867	0.54
Non-Cytoplasmic	868	868	0.08
Transmembrane Helix	869	883	0.49
Cytoplasmic	884	910	0.52
Transmembrane Helix	911	934	0.86
Non-Cytoplasmic	935	986	0.64
Transmembrane Helix	987	1009	0.86
Cytoplasmic	1010	1343	0.83
Transmembrane Helix	1344	1365	0.90
Non-Cytoplasmic	1366	1380	0.76
Transmembrane Helix	1381	1405	0.84
Cytoplasmic	1406	1440	0.75
Transmembrane Helix	1441	1463	0.86
Non-Cytoplasmic	1464	1542	0.86
Transmembrane Helix	1543	1565	0.93
Cytoplasmic	1566	1620	0.96
Transmembrane Helix	1621	1641	0.90
Non-Cytoplasmic	1642	1656	0.88
Transmembrane Helix	1657	1676	0.91
Cytoplasmic	1677	1685	0.81
Transmembrane Helix	1686	1706	0.69
Non-Cytoplasmic	1707	1753	0.62
Transmembrane Helix	1754	1777	0.79
Cytoplasmic	1778	1792	0.65
Transmembrane Helix	1793	1809	0.64
Non-Cytoplasmic	1810	1843	0.56
Transmembrane Helix	1844	1865	0.85
Cytoplasmic	1866	2359	0.54

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTEGTLAADE VRVPLGASPP APAAPVRASP ASPGAPGREE QGGSGSGVLA PESPGTECGA  60
   61 DLGADEEQPV PYPALAATVF FCLGQTTRPR SWCLRLVCNP WFEHISMLVI MLNCVTLGMF 120
  121 RPCEDVECRS ERCSILEAFD DFIFAFFAVE MVIKMVALGL FGQKCYLGDT WNRLDFFIVM 180
  181 AGMMEYSLDG HNVSLSAIRT VRVLRPLRAI NRVPSMRILV TLLLDTLPML GNVLLLCFFV 240
  241 FFIFGIVGVQ LWAGLLRNRC FLDSAFVRNN NLTFLRPYYQ TEEGEENPFI CSSRRDNGMQ 300
  301 KCSHIPSRRE LRVQCTLGWE AYGQPQAEDG GAGRNACINW NQYYNVCRSG EFNPHNGAIN 360
  361 FDNIGYAWIA IFQVITLEGW VDIMYYVMDA HSFYNFIYFI LLIIMGSFFM INLCLVVIAT 420
  421 QFSETKQREN QLMREQRARY LSNDSTLASF SEPGSCYEEL LKYVGHIFRK VKRRSLRLYA 480
  481 RWQSRWRKKV DPSSTVHGQG PGRRPRRAGR RTASVHHLVY HHHHHHHHHY HFSHGGPRRP 540
  541 SPEPGAGDNR LVRACAPPSP PSPGHGPPDS ESVHSIYHAD CHVEGPQERA RVAHSIATAA 600
  601 SLKLASGLGT MNYPTILPSG TVNSKGGTSS RPKGLRGAGA PGAAVHSPLS LGSPRPYEKI 660
  661 QDVVGEQGLG RASSHLSGLS VPCPLPSPQA GTLTCELKSC PYCASALEDP EFEFSGSESG 720
  721 DSDAHGVYEF TQDVRHGDCR DPVQQPHEVG TPGHSNERRR TPLRKASQPG GIGHLWASFS 780
  781 GKLRRIVDSK YFNRGIMAAI LVNTLSMGVE YHEQPEELTN ALEISNIVFT SMFALEMLLK 840
  841 LLACGPLGYI RNPYNIFDGI VVVISVWEIV GQANGGLSVL RTFRLLRVLK LVRFLPALRR 900
  901 QLVVLMRTMD NVATFCMLLM LFIFIFSILG MHLFGCKFSL KTDSGDTVPD RKNFDSLLWA 960
  961 IVTVFQILTQ EDWNVVLYNG MASTSSWAAL YFVALMTFGN YVLFNLLVAI LVEGFQAEGD1020
 1021 ATRSDTDEDK TSTQLEGDFD KLRDLRATEM KMYSLAVTPN GHLEGRGSLP PPLITHTAAT1080
 1081 PMPTPKSSPN LDVAHALLDS RRSSSGSVDP QLGDQKSLAS LRSSPCTPWG PNSAGSSRRS1140
 1141 SWNSLGRAPS LKRRNQCGER ESLLSGEGKG STDDEAEDSR PSTGTHPGAS PGPRATPLRR1200
 1201 AESLDHRSTL DLCPPRPAAL LPTKFHDCNG QMVALPSEFF LRIDSHKEDA AEFDDDIEDS1260
 1261 CCFRLHKVLE PYAPQWCRSR ESWALYLFPP QNRLRVSCQK VIAHKMFDHV VLVFIFLNCI1320
 1321 TIALERPDID PGSTERAFLS VSNYIFTAIF VVEMMVKVVA LGLLWGEHAY LQSSWNVLDG1380
 1381 LLVLVSLVDI IVAMASAGGA KILGVLRVLR LLRTLRPLRV ISRAPGLKLV VETLISSLRP1440
 1441 IGNIVLICCA FFIIFGILGV QLFKGKFYYC EGTDTRNITT KAECHAAHYR WVRRKYNFDN1500
 1501 LGQALMSLFV LSSKDGWVNI MYDGLDAVGI DQQPVQNHNP WMLLYFISFL LIVSFFVLNM1560
 1561 FVGVVVENFH KCRQHQEAEE ARRREEKRLR RLERRRRKAQ RRPYYADYSH TRRSIHSLCT1620
 1621 SHYLDLFITF IICLNVITMS MEHYNQPKSL DEALKYCNYV FTIVFVFEAA LKLVAFGFRR1680
 1681 FFKDRWNQLD LAIVLLSIMG IALEEIEMNA ALPINPTIIR IMRVLRIARV LKLLKMATGM1740
 1741 RALLDTVVQA LPQVGNLGLL FMLLFFIYAA LGVELFGRLE CSEDNPCEGL SRHATFTNFG1800
 1801 MAFLTLFRVS TGDNWNGIMK DTLRECTRED KHCLSYLPAL SPVYFVTFML VAQFVLVNVV1860
 1861 VAVLMKHLEE SNKEAREDAE MDAEIELEMA QGSTAQPPPT AQESQGTQPD TPNLLVVRKV1920
 1921 SVSRMLSLPN DSYMFRPVAP AAAPHSHPLQ EVEMETYTGP VTSAHSPPLE PRASFQVPSA1980
 1981 ASSPARVSDP LCALSPRGTP RSLSLSRILC RQEAMHSESL EGKVDDVGGD SIPDYTEPAE2040
 2041 NMSTSQASTG APRSPPCSPR PASVRTRKHT FGQRCISSRP PTLGGDEAEA ADPADEEVSH2100
 2101 ITSSAHPWPA TEPHSPEASP TASPVKGTMG SGRDPRRFCS VDAQSFLDKP GRPDAQRWSS2160
 2161 VELDNGESHL ESGEVRGRAS ELEPALGSRR KKKMSPPCIS IEPPTKDEGS SRPPAAEGGN2220
 2221 TTLRRRTPSC EAALHRDCPE PTEGPGTGGD PVAKGERWGQ ASCRAEHLTV PNFAFEPLDM2280
 2281 GGPGGDCFLD SDQSVTPEPR VSSLGAIVPL ILETELSMPS GDCPEKEQGL YLTVPQTPLK2340
 2341 KPGSTPATPA PDDSGDEPV