YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|187954955, gi...
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.59
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Non-Cytoplasmic	1	32	0.90
Transmembrane Helix	33	52	0.92
Cytoplasmic	53	72	0.84
Transmembrane Helix	73	94	0.93
Non-Cytoplasmic	95	103	0.83
Transmembrane Helix	104	125	0.92
Cytoplasmic	126	134	0.73
Transmembrane Helix	135	154	0.88
Non-Cytoplasmic	155	166	0.80
Transmembrane Helix	167	190	0.84
Cytoplasmic	191	304	0.97
Transmembrane Helix	305	324	0.92
Non-Cytoplasmic	325	350	0.85
Transmembrane Helix	351	368	0.92
Cytoplasmic	369	427	0.85
Transmembrane Helix	428	452	0.70
Non-Cytoplasmic	453	453	0.44
Transmembrane Helix	454	477	0.85
Cytoplasmic	478	535	0.97
Transmembrane Helix	536	559	0.91
Non-Cytoplasmic	560	574	0.84
Transmembrane Helix	575	597	0.86
Cytoplasmic	598	1006	0.99
Transmembrane Helix	1007	1028	0.88
Non-Cytoplasmic	1029	1069	0.89
Transmembrane Helix	1070	1092	0.89
Cytoplasmic	1093	1106	0.79
Transmembrane Helix	1107	1127	0.59
Non-Cytoplasmic	1128	1161	0.69
Transmembrane Helix	1162	1184	0.85
Cytoplasmic	1185	1255	0.81
Transmembrane Helix	1256	1275	0.78
Non-Cytoplasmic	1276	1283	0.63
Transmembrane Helix	1284	1303	0.78
Cytoplasmic	1304	1588	0.69

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPLAFCGTEN HSAAYRVDQG VLNNGCFVDA LNVVPHVFLL FITFPILFIG WGSQSSKVHI  60
   61 HHSTWLHFPG HNLRWILTFM LLFVLVCEIA EGILSDGVTE SRHLHLYMPA GMAFMAAITS 120
  121 VVYYHNIETS NFPKLLIALL IYWTLAFITK TIKFVKFYDH AIGFSQLRFC LTGLLVILYG 180
  181 MLLLVEINVI RVRRYIFFKT PREVKPPEDL QDLGVRFLQP FVNLLSKGTY WWMNAFIKTA 240
  241 HRKPIDLRAI GKLPIAMRAL TNYQRLCAAF DAQARKDTQS QQGARAIWRA LCHAFGRRLV 300
  301 LSSTFRILAD LLGFAGPLCI FGIVDHLGKE NHVFQPKTQF LGVYFVSSQE FLGNAYVLAV 360
  361 LLFLALLLQR TFLQASYYVA IETGINLRGA IQTKIYNKIM HLSTSNLSMG EMTAGQICNL 420
  421 VAIDTNQLMW FFFLCPNLWA MPVQIIVGVI LLYYILGVSA LIGAAVIILL APVQYFVATK 480
  481 LSQAQRSTLE YSNERLKQTN EMLRGIKLLK LYAWENIFCS RVEMTRRKEM TSLRAFAVYT 540
  541 SISIFMNTAI PIAAVLITFV GHVSFFKESD FSPSVAFASL SLFHILVTPL FLLSSVVRST 600
  601 VKALVSVQKL SEFLSSAEIR EEQCAPREPA PQGQAGKYQA VPLKVVNRKR PAREEVRDLL 660
  661 GPLQRLTPSM DGDADNFCVQ IIGGFFTWTP DGIPTLSNIT IRIPRGQLTM IVGQVGCGKS 720
  721 SLLLATLGEM QRVSGAVFWN SSLPDSEGED PRYCLRTSNP ERETAADSDA RSRGPVAYAS 780
  781 QKPWLLNATV EENITFESPF NKQRYKMVIE ACSLQPDIDI LPHGDQTQIG ERGINLSGGQ 840
  841 RQRISVARAL YQHTNVVFLD DPFSALDVHL SDHLMQAGIL ELLRDDKRTV VLVTHKLQYL 900
  901 PHADWIIAMK DGTIQREGTL KDFQRSECQL FEHWKTLMNR QDQELEKETV MERKAPEPSQ 960
  961 GLPRAMSSRD GLLLDEDEEE EEAAESEEDD NLSSVLHQRA KIPWRACTKY LSSAGVLLLS1020
 1021 LLVFSQLLKH MVLVAIDYWL AKWTDSALVL SPAARNCSLS QECALDQSVY AMVFTVLCSL1080
 1081 GIALCLVTSV TVEWTGLKVA KRLHRSLLNR IILAPMRFFE TTPLGSILNR FSSDCNTIDQ1140
 1141 HIPSTLECLS RSTLLCVSAL TVISYVTPVF LVALLPLAVV CYFIQKYFRV ASRDLQQLDD1200
 1201 TTQLPLLSHF AETVEGLTTI RAFRYEARFQ QKLLEYTDSN NIASLFLTAA NRWLEVRMEY1260
 1261 IGACVVLIAA ATSISNSLHR ELSAGLVGLG LTYALMVSNY LNWMVRNLAD MEIQLGAVKR1320
 1321 IHTLLKTEAE SYEGLLAPSL IPKNWPDQGK IQIQNLSVRY DSSLKPVLKH VNALIAPGQK1380
 1381 IGICGRTGSG KSSFSLAFFR MVDMFEGRII IDGIDIAKLP LHTLRSRLSI ILQDPVLFSG1440
 1441 TIRFNLDPEK KCSDSTLWEA LEIAQLKLVV KALPGGLDAI ITEGGENFSQ GQRQLFCLAR1500
 1501 AFVRKTSIFI MDEATASIDM ATENILQKVV MTAFADRTVV TIAHRVHTIL SADLVMVLKR1560
 1561 GAILEFDKPE KLLSQKDSVF ASFVRADK