YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Mdr50-PA
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	85	0.98
Transmembrane Helix	86	109	0.88
Non-Cytoplasmic	110	151	0.96
Transmembrane Helix	152	172	0.94
Cytoplasmic	173	222	0.95
Transmembrane Helix	223	241	0.95
Non-Cytoplasmic	242	247	0.70
Transmembrane Helix	248	269	0.89
Cytoplasmic	270	325	0.96
Transmembrane Helix	326	348	0.88
Non-Cytoplasmic	349	366	0.90
Transmembrane Helix	367	390	0.84
Cytoplasmic	391	742	0.99
Transmembrane Helix	743	767	0.88
Non-Cytoplasmic	768	791	0.89
Transmembrane Helix	792	814	0.94
Cytoplasmic	815	867	0.95
Transmembrane Helix	868	887	0.85
Non-Cytoplasmic	888	891	0.71
Transmembrane Helix	892	913	0.86
Cytoplasmic	914	976	0.93
Transmembrane Helix	977	997	0.86
Non-Cytoplasmic	998	1011	0.71
Transmembrane Helix	1012	1031	0.72
Cytoplasmic	1032	1313	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVKNGDVVK DDVNSRSQYK TNIVLGAKLE DSDRDRKSFE PNKSKKKSKH DESDASDEED  60
   61 GSQYHEDVKQ VSYFQLFRYA TKKDRALYVI GLLSAVATGL TTPANSLIFG NLANDMIDLG 120
  121 GLLESGKSYR ADDAISTLLL DKVRQFSLQN TYIGIIMLVC SYLSITCFNY AAHSQILTIR 180
  181 SKFFRSILHQ DMKWYDFNQS GEVASRMNED LSKMEDGLAE KVVMFVHYLV AFVGSLVLAF 240
  241 VKGWQLSLVC LTSLPLTFIA MGLVAVATSR LAKKEVTMYA GAAVVAEGAL SGIRTVKAFE 300
  301 GEAKEVAAYK ERVVAAKILN IKRNMFSGIG FGLLWFFIYA SYALAFWYGV GLVIKGYHEP 360
  361 AYENYDAGTM ITVFFSVMMG SMNIGMAAPY IEAFGIAKGA CAKVFHIIEQ IPEINPIDGE 420
  421 GKKLNEPLTT IEFKEVEFQY PTRPEVSILN KLNLKIHRGQ TVALVGPSGC GKSTCIQLVQ 480
  481 RFYDPQAGNL LFNGTNLKDL DINWLRSRIG VVGQEPILFA TSIYENIRYG REDATREEIE 540
  541 AAAAAANAAI FIKKLPKGYD TLVGERGAQL SGGQKQRIAI ARALIRDPEI LLLDEATSAL 600
  601 DTASEAKVQA ALEKVSAGRT TIIVAHRLST VRRADRIVVI NKGEVVESGT HQELMELKDH 660
  661 YFNLVTTQLG EDDGSVLSPT GDIYKNFDIK DEDEEEIKVL SEDEDEDVMV TDEKNKKKKK 720
  721 KKVKDPNEVK PMLEVMKMNK PEWLQIAVGC ISSVIMGCAM PIFAVLFGSI LQILSVKDND 780
  781 QYVRENSNQY SLYFLIAGIV VGIATFLQIY FFGIAGERLT ERLRGLMFEA MLRQEVAWFD 840
  841 DKANGTGSLC ARLSGDAAAV QGATGQRIGT IVQSISTLAL GIALSMYYEW SLGLVALAFT 900
  901 PFILIAFYMQ RTLMAKENMG SAKTMENCTK LAVEVVSNIR TVASLGREEM FHQNYIGMLI 960
  961 PAVEISKRNT HFRGLVYGLA RSLMFFAYAA CMYYGTWCVI HRGILFGDVF KVSQALIMGT1020
 1021 ASIANALAFA PNMQKGVSAA KTIFTFLRRQ PSIVDRPGVS RDPWHSEGYV RFDKVKFSYP1080
 1081 TRSEIQVLKG LELAVSKGQK IALVGPSGCG KSTCIQLIQR FYDVDEGATL IDECDVRNVS1140
 1141 MTNLRNQLGI VSQEPILFDR TIRENISYGD NARNVTDQEI ISACKKSNIH EFIANLPLGY1200
 1201 DTRMGEKGAQ LSGGQKQRIA IARALIRNPK IMLLDEATSA LDAESEKVVQ DALDAASEGR1260
 1261 TTISIAHRLS TVVHSDVIFV FENGLVCEAG DHKQLLANRG LYYTLYKLQS GAM