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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-12
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGHVGLFILL FAVFGTFIEA VESTAKPQCK FTSTNGYYAH VPSNLPIGDV IFRGTVSPPD  60
   61 AEMMIANVRS DAFKETDWSD HLVIDRSDPG SSATWLVRLS ASLSLPVYPS TLKEANLFVT 120
  121 VICNGYAYPL FTLHIDPTNR FAPQFYHEPY VVAVEPNLPI WSIIETPVAA IDWDPEESYR 180
  181 LMFWLEDSHK GIDLVEETPK SRELISGSAD WSENQLPRKI QLRVTGNYEL PMSLRLIVSD 240
  241 NAKENSRKST TFINLVEKSP NLALPKTTVA PTTTTVPRTT TTVPPTTTTV PPTTTTVPPI 300
  301 TTTYSEDIID SEVTKSPQEL IAELKKALKS EISGKPKIFK EAEEPEIDFV AFGTKNREMN 360
  361 AIDTENSEEI EKFEPIGATR FAQCSVRTTV PENSPKGTKV AHLETLNRRN MTSFGKFFNF 420
  421 DSAHLLDKCT LDKSFDLSIN MPSFGKFFNF DSAHLLDKYP STKIKLIDPD GTFGIDAETD 480
  481 DVVILDPKLV DRELFNTLEL VAEIENSVDP SVQCTRIRIY VDLDDENDNR PVFENEHYFF 540
  541 HIDPRFPPGE EIGRLLAQDI DQGSNGQITY HLLTQDVPFQ VGTHGKKAVI MSTGKVDPAV 600
  601 ASYNLTVEAR DHGEDLVKSA KVPVEIFVLG GGEVGGVKKA VGGVRQKIQK PAENDMLPND 660
  661 ENRAETKKQS SQEVGGASRS EDKKTKEPED EAESDTVTEK KVDGAGQEVG GVRPEVGGDN 720
  721 QEMGGASKEN IEETEEIEEE TEEPKSEASS QDKVGGANSN FQNKSTDKSL ENQLNISESE 780
  781 TSKEMGGATI QKVGGVKQEN VKTILKAPET GESENLENLE DSEDVEVVTV IEEVEVEEDD 840
  841 DVIEDHVENV ENDVRTTTAS MSRTVDHQRT TTEEPEANTV EEEPPAPTTT VFSFPQPEYT 900
  901 YDAFGMEIQE NDVIGKVAAG PRTEFYAVDR EMIGLIKINE AGELLAGKKL NRHKDGPLKF 960
  961 GVSATNGFET ARAQVTVLRD ANRDVMSAMP RFDRETYRFS INENQQPEVI GFVRAFHSAI1020
 1021 SSSESVRLTY SLIAPAHIDE LPFEIHEQSG EVSTSRPLDT EQKKFYRFQV RACLTQTICS1080
 1081 TSDVIVEVVD VNDNPPIFTN RKLEATVESD VPPGTRIVKL FAKDADAGNN SRLSFALMSE1140
 1141 NEPFSIDPNS GQLTTSQSLT RPLYTILVSV SDAGVPQRSD TAEVTVVVKG TNPSPPAFDQ1200
 1201 KEYKAVIAAP IRAGQVIGEV RATDPDPGME GLVTYKLLRS DNNDHQKFMI NSKTGVISAI1260
 1261 SPLSLEDGPI ELGIEATDNG KNLKRKVKTN MKIDIIDSKT LKFLPLPTTV YISTEKAVGS1320
 1321 VILRVSAVST DNENIKFRAL QENSQFVMDG DLLRVANHLV EGESILSIRA ETDTVHVDHQ1380
 1381 LKVIVMSDRD KYPVFPQLTY DFDVSTDGHF PRIVHQFNAK LGAGTLRYTF FPPSPAPAGF1440
 1441 YLDDKTGELF VTSQYPETKR ETVFVVVRAV NMQANKFYSD VGVAITPVST TNPTLRFQQP1500
 1501 NYNFEVYESL GEGEAIGTIS VTGSTSPAKL SLSPDTSFLG IHQNGTLFLA QKVDAEEIES1560
 1561 LSQEFTVLAE SSGKENPETA RALIHVAIRD VNEFQPEFDE DDVEFSLERG VATPGATIGR1620
 1621 VQAHDQDVSE KNRLIYRVVG GSGRKLVFIQ EDGTIIVGDE QIPAAVDEFD LIIEAVDRNG1680
 1681 NHDSTHVIVY IDGAPTSSTE EHEPLFPAEP LVWNVTEGTT QSFQLQTASD DVIYRIVGGN1740
 1741 DDGLFELSSR GELKIVSELD RTRQKSYTLQ VEAKKSGVAK VAEVTVNINP TISNAHAPKF1800
 1801 TRDHYSGTVP LDAPIGFPIV TMEAFDEDDD PVQYTFKGTG CADQLGIDNS GRVAYKVAMK1860
 1861 DRTTGSLECT VVVSDGEHSA ETMLTLLVQE NEEVETPQKP PNHAPTFSMA EYTFTIPQNS1920
 1921 TDLGTVMATD PDGDLIDFSI EPTEYRNLFH VDSSGRIFVR GPLEQQRYSF LVVAEDRGSP1980
 1981 ILSSFVNVKV LVEATQEQLD PEASSPQHFQ FSQAVYSWRV ESGLPVGSIV GFVKPVGVTD2040
 2041 GISYSFISGD YLAIDSDGRV AVVKPLTETV NDVVIAMKNG EILAETRIFV GVEPSEATTR2100
 2101 ILGPVTTTQV PSTEAPATST QSSEESPSSR TSELPTLPPA TPRITSRPSQ LTLAPTEDIS2160
 2161 MVSTEQGPTL APIDLPTRAV TGRVIPLDSG RFTFTSPIYS AFSLEGDFKS GIELEIKPTL2220
 2221 AVQGSSEPPS FSIEDTTLPF FLTPEGKLIM FEADRERHES YLFTIVAKAQ GQMARARLNV2280
 2281 TILDVNDNYP RFQAHPDAVG ISRTMHLGSP IYQLKAVDLD KFPDNQVTYS LNSPWISIDS2340
 2341 REGLLRVNGD LQAAPESLDL TVEAQDSGKP PLKSETHLRI LIFKQNIPKF LETPLEVTQI2400
 2401 PTKMAPGAHI KTLLAGPTVS EQDTILYRLV DTVNGLFEIK HAGELVLARR PLDNEAGREY2460
 2461 QLNVTAENSK GTDWVVLPIF VEGRLSSTNT PSTSCQFQQK VYRAQVMENS GAHDAVVRVQ2520
 2521 AGCQKKFRYA FHTQSKEFEI DSQSGQIYTT EPLDRETKST YFLTVNVIEQ NRKRQSDVQV2580
 2581 EQLSSKLSPW QTLVVVTVLD DNDNAPVFLH MLPDSTLAAV LAKSLEKSDV EHFELQATVT2640
 2641 DGKHAVHVPL NIYVLSVDTN VVQLTKNTPH SDIDPSAVER KLTEVSEGKS GKLKEILGMD2700
 2701 TRILVAQPFV SDDGKTDMKK SHVFVYSLDN LSQKPISRDE LKRLLMAHSD GLHPLQISSV2760
 2761 SLLSTGNAAG NGQFLLTVVL LVVLIALLLF ICALIMCCAK RRARNTAGVM EGAYMINSVG2820
 2821 SGPRPYDVEN ISRLTAQNVL AGRPLPDPQE HRIDMSSNDT DIALERDDTT REFSNSVRER2880
 2881 PTLLQSALQR QNVRIFRIFR KIEKKIQFLN FKFTDPPINC QR

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