YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pmp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.36
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKLQVIEKK FEFGFRVFYN LFRLFPLIYS NTWLTLVLTA VTIAASVGNE IVNYKTGVIP  60
   61 GKFYVALIEK DEPKFWHIFW IASLCYVGLC LLMALMNFFS WCLYIQQRKN LVQCLHKLYY 120
  121 KNNFYYQLNG VDDHGIDNPD QRITQDADKL TKLLGTSIIP TVLLSPFIIS YYGVRVWETA 180
  181 GGWGFGMIVA YFLIGVIINR ILIGPITPWA ARVEKAEGDF RYKHVSVRVN AEESAFYKSA 240
  241 EFEHVFSDLS FDVLFKRLLN FMCWRFPSQF FQSFFDYYGG CMSYILQLFP LFVFHMYDNL 300
  301 TPAELSGQIS NNAFYFIYLI NCFTRLTDLA MNIAELGGYI MRVSEFVDTG KLHQSGIKNE 360
  361 AFRRNSELPE KASGDDNLIE TEHLSFGPPT NSNIRIIENL TFHLPRNKTL LITGDSGIGK 420
  421 TSLMRVIADM WPHQGILKKH FKKTDAYFLP QKPYFPVGRL SLKQQLVFPA EENEEKSGND 480
  481 EEIVRILHEL KLGHLLPIVG NIHDSVDFEW QETLSPGEQQ RLCFARMILA EPTVAFLDES 540
  541 TCNVDEGMEN AMYEMLRKVG PIFWL

Type	Start	End	Confidence
Cytoplasmic	1	20	0.96
Transmembrane Helix	21	44	0.86
Non-Cytoplasmic	45	77	0.92
Transmembrane Helix	78	101	0.89
Cytoplasmic	102	152	0.95
Transmembrane Helix	153	174	0.90
Non-Cytoplasmic	175	180	0.87
Transmembrane Helix	181	203	0.91
Cytoplasmic	204	273	0.97
Transmembrane Helix	274	296	0.81
Non-Cytoplasmic	297	313	0.80
Transmembrane Helix	314	332	0.36
Cytoplasmic	333	565	0.51