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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-1
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.94
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSKNKWNIL IFSLIFLIFP TFCQCLTKFT VPESAQIGTR IGWISGKREE SAAPKYFVVF  60
   61 PDEQTSKFLK VDERSGEIST IAHLDYEKRS KFDIVAVKVE ESGETIDILV EVDDENDNAP 120
  121 SFADQVVKLE ISEFAQLGTS FALPTVTDGD GPKFDVHRFV ILQGNVNNVF KLASRKVNEQ 180
  181 LQADLVVNGQ LDREFRDKYE LLIEAQDGGK PAKIGQLRCS IEIIDANDNA PVFSRSRYTA 240
  241 SVSANISIGS HLITVQATDA DIGENSRISY DIKKTSAPSN SNFAISQSGV ITTTASLLPA 300
  301 STHDVIVVAS DHGSPSLSSS AVVTITVLGS TLSSPPLDII WLVESNSAHL MENSTLGSIV 360
  361 ARVSIAQQYR DTKLRLIGSS ALCPQQTDQA HVYLLLLCGI LDRETASEHH LKFLLEKDGQ 420
  421 IIIEHPQLLT IGDINDNAPQ WHSSQIHISL NRTQGGSRTL TAKDPDLGQN GWIRYSVLDT 480
  481 ELVSIDKETG RIFVPNTIDC NIGSEIKFRV RAEDGGSPAL STDLQVVADL LDTESKPPQF 540
  541 EKALWQVEIP EDTPIGTCLV KVVANNSQCG NSKRIRYSLQ NQDEHLTVDT MSGTVCIQKT 600
  601 FDFEKQKSYQ TTVIATNANS ETSTSLISIR LKDVNDNWPI FYPNEYHLTV REGPKPEEPL 660
  661 LVVSASDMDS GTFGEVSYHI LSESSSFSIN PVTGEVFAQK PLARGRFHLV VSAKDGGGQS 720
  721 SENSANIHIT VIDKDTKTPQ FSRSKYEIRT TEDILPGIAI GSVGAMSKVK YSIYSGDQDH 780
  781 NFSIDEDTGK IYVTRYLDAD VHDTVLLNIQ ATLPSGESNQ TQVVIFIEDH NDNPPQFSSS 840
  841 LVEISIREDL KLHEPFYVVQ ASDKDKKKNG EVRYSIISSH PGSSIEIDQF TGQLSTGSLL 900
  901 DYEATRNYKL RVKATDLGIP PRSSNMTLFI HVLDVNDNAP EFEKSWYTME VLENSPPKTI 960
  961 VGKVVARDKD SLENGQIVYR ITNGSEYFGI DEKLGNVYTK RSIDREVISH VDISIVAEDK1020
 1021 GVPPRSSTAS ARISVLDVND NPPSCLSITP IVVPAGSPLS TAIGTIVAMD PDKGLNGSVL1080
 1081 YRAQLQSSLF VVKSNGDVYL RRQLNASDER HQRLSVIVSD QGVPRKSVVC HVPVRISKGS1140
 1141 ADIQIQEPFQ KYIEIPKSCP TGCRLTTLNA TGVSSWLIQS SEISNHFAIR EGVLFMISHP1200
 1201 IHRPPYSLVI VLSDKNDRQK SIQLRVLASG EAANKEETIR ISDSNSIGTK IGRLGEKSAD1260
 1261 GSFFYRFSSE ESCPLELDQT GGLLYLADGL RRGDTHNFSC FFEKFNTTDG SAEEMRVDLE1320
 1321 ISRTKSDKPR FDTGHLRVNI REDTPTGSII TTVNATVSDD SASPISYRFP LLIDNFSIDQ1380
 1381 FTGDITLIDT LHWHVTPTYN LIVEAFTSGP GTTLLVTVNV DDVNDHTPFI VSQPTVLLPS1440
 1441 SYRKGGMVHR VVAIDLDKDP EIRYSLKYAG SEVAKEFFKI DEKSGEIFVV ESSSALSTSF1500
 1501 GGAGLPETLT IRATDLQDLT KFDEQKVLLK ASNASRSTWH FFDEQHKDVT ILSTSPQGSQ1560
 1561 ILQLKFQEGV DLQLIPSSPH FELKSSKIVQ KSASVATGTQ RFTIVAQKDD ELDYSTLKIH1620
 1621 VEPVFTEPPK ISSTSCGVVT IEENVGIEDF KRILATGMTE ESRFRFQGNA PKFSINSTTG1680
 1681 SISVLPLDRE ASQEHLLIII LTDGGSRNDS CTVRVTVADQ NDNKPQLDAS TPSELEIAES1740
 1741 SRVGDVLHRF RASDMDIGQN GKFSFELLED SSGSLDLVPE TGDLVLRRLS SLQSWKIKLR1800
 1801 VVDHGVPGLY VEKNLEISNR NPQTEAKAPL EFLKQTYLST IDEGLPRGQF IAKLQPELAG1860
 1861 LTYSIVEGNI DSAFSVDSEG VIRTNLELDR EILERYSLKV IGTGSGQQIG TRVDVRVNNL1920
 1921 NDNVPSFPMS KPRRVPENLR VGSYVATVGA KDVDNLAPLR YFLVSDSSGQ TPTHFNIDQF1980
 1981 TGTIHLTAPL DFEVLPEHTL TIKATDGSFD TFTNLTIFVS DINDNAPTFS KPLYQTTVSP2040
 2041 ATFSPGQPFA KIEAHDLDAR GALTYSLGQG SSSIFRVAPE SGALFMKVLP PAGERYLVTV2100
 2101 TATDNGVPSF STSVPVSVII GEAEPTDKPG FEKAEFRFEV MENSKIGLQI GNLSGEESRE2160
 2161 FHYRIQDPEA SKIFSIDKFG RLFVAGPIDR EQRATHEFQV EIDNEMMTSQ KVQCKCHVIV2220
 2221 LDENDNLPVF TSVAYYLSLK DSMAHGQKIG QIMASDQDSG ENGRVSYRIL SGNDLNIVTL2280
 2281 NPDTGSIQLN EWNDAQLDEF PNATWQILVE ARDHGHPARA AVGKVQVSLK MSSWSGSAPF2340
 2341 FVLPVYEVHV LEDTSVGTVL QKIRASNRLG MRNDGLLYSL KEHQGKLGID VKTGELTLKT2400
 2401 HLDWESEPII SMYLSVSDGN GRSAVVPLKI VVEPVDEFAP VFTKSSYTLQ IPISTPAGES2460
 2461 VGQMQAIDED GGVHGVVKYS ISDRQSTVKI EEHTGIIRLQ KPLVSRRNLT IEQITVVAYS2520
 2521 SPTKQSKTTV YLEIGPFDVQ PSLPKLLLHS KPVQIAVASL ILLLFLLIVV ICICMCKSRR2580
 2581 KTQNEKEKKH PDVIVTAERR PSSQKPTLQK QVYSVKTGEI RTLSDAQHHH HHPTHSMTSS2640
 2641 VSTSSDALRM VRGSSRSQMD SGIDPDNVSI NSSVTDYLVS LGVNANPIPP RIRPNTTYDS2700
 2701 LMNEYIYARV EDVLPPGPIS LTTPNQHSLL RQPLSTSSSV ASRRPPPIIP SFEPLTEIFN2760
 2761 EIVEMRKQDG RKEYIQVEI

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