YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-5
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.65
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	55	0.96
Transmembrane Helix	56	77	0.82
Non-Cytoplasmic	78	92	0.75
Transmembrane Helix	93	113	0.71
Cytoplasmic	114	118	0.69
Transmembrane Helix	119	152	0.65
Non-Cytoplasmic	153	180	0.73
Transmembrane Helix	181	203	0.85
Cytoplasmic	204	210	0.66
Transmembrane Helix	211	231	0.74
Non-Cytoplasmic	232	261	0.81
Transmembrane Helix	262	283	0.77
Cytoplasmic	284	298	0.94
Transmembrane Helix	299	318	0.92
Non-Cytoplasmic	319	349	0.90
Transmembrane Helix	350	369	0.83
Cytoplasmic	370	385	0.81
Transmembrane Helix	386	408	0.77
Non-Cytoplasmic	409	441	0.68
Transmembrane Helix	442	464	0.84
Cytoplasmic	465	479	0.88
Transmembrane Helix	480	507	0.86
Non-Cytoplasmic	508	725	0.86

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIHVEEEEYD QLRSFYAKKR RAPMNQVEYD EKYGYQKRLK DGGKFKKRST KVASRYYVPF  60
   61 TSVTNFKIFL LNLFPIFGWL PKYDWKNSLT SDVVGGITVG VLQIPQGIAY AILSRQDPIV 120
  121 GLYTSIYPVF LYIFFGTSKH ASLGTFAVVA LMTGLAVERE AFIPSDNLNS TLLPGDEALP 180
  181 SPIEVSCALV LGVGLIQFLM GVFRLQFLTT YLSDQLIAGF TTGSAVHVLV SQFKELFGLR 240
  241 GLVKHSGPGY LIRNVYDTVT NLPKANFMCC AISLATMILL HCGKEYINPI MKRKMKSNIP 300
  301 IPWELVAVII STIFVALIDA NELYNVKIVN KIPTGLPELS LPNPNLIPRV LPDAISIAVV 360
  361 VVAVHLSLSK MLAKKYEYEI DAGQELYALS FTAIGGSFFP TFPTSIGLGR TMVGVESGVK 420
  421 TQVATFFSCL FVLSVSLYFG RFLETLPMCV LSAIIVIALK SMLWKLRDLK GIWKLSKIDC 480
  481 CIWMVAFFAT VLVDVSEGLL IAIFFALFTT ILREQYPKWH LLANVKDTDE FSDTQQYQET 540
  541 IFYKGICIFK FDAPLLFHNV ECFKKCIEKV YDEWKKSSEF NFVKEPNAGK GSKFTFEGMH 600
  601 RIAPITEIPL HPGINRDPIL PRHFVIDCSG FTFIDLMGVS ALKEVFSDLR KKRVQVYFAS 660
  661 TKVPVREMFE KCSFFDFVSK ENFYPTLRDA TGIARLRQTE FGSLDTTSIP EFDEISNVTN 720
  721 NYPTQ