YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	mod-1
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKFIPEITLL LLLFVHSTQA KGKRRKCPEG AWSEGKIMNT IMSNYTKMLP DAEDSVQVNI  60
   61 EIHVQDMGSL NEISSDFEID ILFTQLWHDS ALSFAHLPAC KRNITMETRL LPKIWSPNTC 120
  121 MINSKRTTVH ASPSENVMVI LYENGTVWIN HRLSVKSPCN LDLRQFPFDT QTCILIFESY 180
  181 SHNSEEVELH WMEEAVTLMK PIQLPDFDMV HYSTKKETLL YPNGYWDQLQ VTFTFKRRYG 240
  241 FYIIQAYVPT YLTIIVSWVS FCMEPKALPA RTTVGISSLL ALTFQFGNIL KNLPRVSYVK 300
  301 AMDVWMLGCI SFVFGTMVEL AFVCYISRCQ NSVRNAERRR ERMRNSQVWA NGSCRTRSNG 360
  361 YANGGSVISH YHPTSNGNGN NNRHDTPQVT GRGSLHRNGP PSPLNLQMTT FDSEIPLTFD 420
  421 QLPVSMESDR PLIEEVTVKV VN

Type	Start	End	Confidence
Signal Peptide	1	20	0.99
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	238	0.99
Transmembrane Helix	239	261	0.88
Cytoplasmic	262	269	0.76
Transmembrane Helix	270	289	0.85
Non-Cytoplasmic	290	303	0.84
Transmembrane Helix	304	326	0.90
Cytoplasmic	327	442	0.91