YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ent-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	321	0.95
Transmembrane Helix	322	342	0.92
Non-Cytoplasmic	343	372	0.93
Transmembrane Helix	373	392	0.94
Cytoplasmic	393	401	0.79
Transmembrane Helix	402	420	0.96
Non-Cytoplasmic	421	425	0.80
Transmembrane Helix	426	447	0.90
Cytoplasmic	448	464	0.79
Transmembrane Helix	465	484	0.91
Non-Cytoplasmic	485	494	0.79
Transmembrane Helix	495	516	0.93
Cytoplasmic	517	555	0.96
Transmembrane Helix	556	577	0.90
Non-Cytoplasmic	578	594	0.94
Transmembrane Helix	595	617	0.87
Cytoplasmic	618	624	0.78
Transmembrane Helix	625	643	0.94
Non-Cytoplasmic	644	661	0.89
Transmembrane Helix	662	685	0.89
Cytoplasmic	686	698	0.91
Transmembrane Helix	699	721	0.89
Non-Cytoplasmic	722	729	0.90

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPSTKDRQAL CKKCKKGIAT KSSRASKRLR SSKSTRSRKS VKPSKSNKKA ENEKKRQVLR  60
   61 NWITRKRREF NNEDSSSQTT SKIPKRAILF CVMTDTVKEK SALCAIIATK RKRTKKNNKP 120
  121 IQIIAELRMS TKFHFKRVFE IVEKMCREQG IDDIDDHSYL LEVKSVNAFE GNSFSLAAGI 180
  181 ALYAVCSGTT VKNETIVIGK LDKTGNIEWD EYAEEEVKHA IKHNFQQVLM PFTNLPHVSE 240
  241 EHKQAIDCNG IRTFKDALEL MVVHPSSMQR HNAGADDVST NDYDTFVEKS VKHTKSPESI 300
  301 ESGSITDQNI TDTDEVKDLG NYVFFIFMMF GFGALLPWNM FLNISFDYYT MFKLRSADGN 360
  361 ATWYSSNFQN SMTISAQIPS LVFSVINIFI AVKGDLTRGM KICLIVVQLM VIVTVVFIYI 420
  421 DTSTWIATFS MLTLGTIVVL NAANGLFQNS MFGLASPFPF KYTNAVIIGQ NFCGTAVTVL 480
  481 SMLTKAASDD VQMRASLFFG LSSVAVVVCF ILLNFLKRLA FYKKFGILRT SSQSDEEGIS 540
  541 SWESVKLAFE KSKMQFANIF VLFFVTLALF PNVCMYVKDA KKGELHSFVV PEKYFMDVVT 600
  601 FLNFNLFAFL GSLMANWIRF PGPNTVWICV AARFWFMFYF PAANYHPMDF PRAYPVLFES 660
  661 TWLFAFNICI FALTSGYLSS LIMMYAPRSH EDPKIQRMAG MIASFFLIFG IVAGLVFSWQ 720
  721 IRLFMTGYA