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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: cdh-9
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.99
Topology Confidence: 0.93
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIPYLGRSLL LLALLAQYSN TCLLKNGMSS VYLSAFEDLK PGNVIGTLPF ESQTSKETDV  60
   61 ELRVVKGNEL VDVKPGSHDL ILKKTLDRDE GVGKFEAVVE CRSSNLDTDF SQLNISVFVT 120
  121 VKDINDNAPV FDSAEYFVDI KEELPTGTIV FTDFEATDND QPGPNSFVQY TIVAGPHSHF 180
  181 LEIPDPFKPV ITIKDRINYE EIKKFSVEIE ARDQGEPSLA STVPLHVTIV DVNDLLPRFK 240
  241 HSHYTAKSQK NGVLVFEPEA ISAQDGDRLN ASLIFSLSGE LSEHFAIDND GSIRSITPNP 300
  301 PQRATFFVTA SEREDTERNS TAILSIRLQS SLAFQHNTYS TTISPTTPIG STVITVVANS 360
  361 ENNTPLTYSL LADTNTVSID EVSGNVVLRK KLEKPETLNV TASDGENVVS TALHLMTANS 420
  421 EESCRSPIKF EKFEYKMTIG KLNVLGVVNA TSRTGTKITY ILMNMNNDFE IDTNGVVKLL 480
  481 PKARLQCKVC ELIVVAKSGT QMAITKINVD NPAFVLHSTT ALTLLILIIL CLIFTMLAIL 540
  541 VCRKFCEKWK TGHRRSSICW LNGTTDTGIS ITTTTPNTTT RYVVNSDRDR CYESKSPGPK 600
  601 RSQGAHLVPV TVTSDGSTPT VYF

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle