YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	sulp-1
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.73
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	83	0.89
Transmembrane Helix	84	104	0.82
Non-Cytoplasmic	105	119	0.64
Transmembrane Helix	120	144	0.76
Cytoplasmic	145	173	0.44
Transmembrane Helix	174	197	0.81
Non-Cytoplasmic	198	244	0.67
Transmembrane Helix	245	265	0.86
Cytoplasmic	266	276	0.67
Transmembrane Helix	277	296	0.88
Non-Cytoplasmic	297	316	0.73
Transmembrane Helix	317	339	0.77
Cytoplasmic	340	360	0.79
Transmembrane Helix	361	380	0.92
Non-Cytoplasmic	381	414	0.73
Transmembrane Helix	415	438	0.86
Cytoplasmic	439	454	0.71
Transmembrane Helix	455	486	0.82
Non-Cytoplasmic	487	729	0.73

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDSISLLVGP PPNASRALNQ DDFDTRYNFA KYRKKKTNTE LAKQFAIGDN WILYQSPNPW  60
   61 TQILAITTWI NKYHVKDSLG KDLIGALYLS LLLLPQAIGF GVVINDVASA VYSMFIPQII 120
  121 YAFFGSAQHS SLGALSFLSI MIYCSIEYSH SHLSSISLCC AFIQLMQFLL PLEFIFSYIS 180
  181 TSALSGFSVG LFIRIVFRFL PQFLVFRGHD CKSTSAVGIL LPNTTDNVKR VLQCFYAAVP 240
  241 CLRSADTILI VATVVAAMVF IIFKWRLSRF LISKIGFSAP HEFFVLLTVT LIIFFFQPDV 300
  301 ASQASSRIDL SIPKIGLWTL PSFNTFLDSF AISIYAMTSH MQITKSIAEE KMYKVHRKQE 360
  361 LFCFSIISIL SSFFGLLPPS SSYGSSQINI ESSKFSLVAN VLSLIPTILM VHFGAPLFNA 420
  421 LPICAIGIMV ITSFNGWFSD LKNIREIFYS STWDAAIAMA AIVSALIFPN VCTGFICMLF 480
  481 CSIFAVSLKV QFPNVEVLAK LSESHFAEEN RYEGDCLDTP LRIIRLSGPL LSVNCESIRS 540
  541 ELFKQAVVVK GLIGIGIGTR TASLRSQCPS AIGPKFSIQE SICARESVNL SANITIIQEC 600
  601 DVSVALPPSE DTPPIVRFLV LSMNGVTGID KDMLTCLSQV YGDLSSENIK ILLAGVPAFV 660
  661 RDSMELLGFY NTVPRTQFYP NVQEALLSAR NTVLPFHMSV SMNGYRDVIA LSCAASNADL 720
  721 NRQPSPEAV