YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	EG13035
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.89
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRYFILMFTF VCSFVAAQPT IVPQLQQQVT DLTSSLNSQE KKELTHKLES IFNNTQVQIA  60
   61 VLIVPTTKDE TIEQYATRVF DNWRLGDAKR NDGILIVVAW SDRTVRIQVG YGLEEKVTDA 120
  121 LAGDIIRSNM IPAFKQQKLA KGLELAINAL NNQLTSQHQY PTNPSESESA SSSDHYYFAI 180
  181 FWVFAVMFFP FWFFHQGSNF CRACKSGVCI SAIYLLDLFL FSDKIFSIAV FSFFFTFTIF 240
  241 MVFTCLCVLQ KRASGRSYHS DNSGSAGGSD SGGFSGGGGS SGGGGASGRW

Type	Start	End	Confidence
Signal Peptide	1	17	0.99
N-region	1	8
H-region	9	14
C-region	15	17
Cleavage Site	17	18
Non-Cytoplasmic	18	174	0.99
Transmembrane Helix	175	194	0.96
Cytoplasmic	195	202	0.81
Transmembrane Helix	203	221	0.94
Non-Cytoplasmic	222	227	0.79
Transmembrane Helix	228	249	0.94
Cytoplasmic	250	290	0.89