YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE39537
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	34	0.97
Transmembrane Helix	35	54	0.92
Non-Cytoplasmic	55	85	0.92
Transmembrane Helix	86	107	0.80
Cytoplasmic	108	116	0.66
Transmembrane Helix	117	137	0.90
Non-Cytoplasmic	138	144	0.77
Transmembrane Helix	145	166	0.85
Cytoplasmic	167	177	0.85
Transmembrane Helix	178	199	0.92
Non-Cytoplasmic	200	206	0.75
Transmembrane Helix	207	228	0.88
Cytoplasmic	229	268	0.97
Transmembrane Helix	269	288	0.73
Non-Cytoplasmic	289	306	0.69
Transmembrane Helix	307	327	0.69
Cytoplasmic	328	338	0.88
Transmembrane Helix	339	361	0.90
Non-Cytoplasmic	362	367	0.79
Transmembrane Helix	368	388	0.94
Cytoplasmic	389	402	0.76
Transmembrane Helix	403	425	0.85
Non-Cytoplasmic	426	434	0.76
Transmembrane Helix	435	455	0.93
Cytoplasmic	456	474	0.96

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEAEPPPSRT LPYGTSETID DDEALESKRW KRRHVVAILA LLGFANIYAM RANLSIAIVE  60
   61 MTSGTERKVN GTTLHVLGDF ENWTPMTQGV VLSSFFYGYI VSQLPGGYLA YTHGAKTIFF 120
  121 AGTFGTAVFT LLTPPFARMG YGMLVFARFM EGLLEGVTYP AMHVIWSRWA PPMEQTKLAT 180
  181 FAFSGSYFGT VVAMPLSAYL GEHFGWPMIF WFFGALGVIW CMVWYKTVHD RPEDDPKIST 240
  241 SELALLQRDA VSQNHYIVPW AQILRSKPVW AVIVAHSAQN LGFYIMLTNL PKMLKDIAGY 300
  301 NVEKAGIASS LPYFLMGFQI ITGGQLCDYL RRDKHYDTLF VRKMACALGF IGQSVFLFLV 360
  361 MTTSNSLLLV LFFSISIGLG GICWCGFSVN HLDLAPQYAG HLMATSNTFA TIPGIFGPLL 420
  421 VGAIVQNGTI GEWNVIMYII ISAYLLGAAI FWKFADATLQ PWAAEHTSFV GQLE