YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	hke-4.2
Protein type:	Transmembrane with Signal Peptide
Type Confidence:	0.99
Topology Confidence:	0.46
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Signal Peptide	1	20	0.96
N-region	1	11
H-region	12	17
C-region	18	20
Cleavage Site	20	21
Non-Cytoplasmic	21	156	0.99
Transmembrane Helix	157	179	0.95
Cytoplasmic	180	190	0.86
Transmembrane Helix	191	212	0.92
Non-Cytoplasmic	213	238	0.94
Transmembrane Helix	239	260	0.86
Cytoplasmic	261	332	0.92
Transmembrane Helix	333	354	0.61
Non-Cytoplasmic	355	375	0.55
Transmembrane Helix	376	398	0.90
Cytoplasmic	399	406	0.50
Transmembrane Helix	407	429	0.87
Non-Cytoplasmic	430	440	0.45
Transmembrane Helix	441	460	0.92
Cytoplasmic	461	462	0.46

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLVKSCIFLS FLAIAAYGQA HLKYTKEMND PEYVQQNVHH QGHGHAHGGH GHAHDADGGC  60
   61 PYAKAAAAEA ATAAAHDHGH AHDHDHGHAH DHGHAHDHHG HSHDEEEDHH HGHAHDHHGH 120
  121 SHEDHGHSHG AESAKQVGDE YQYTGFLSFL NDAKTRLWVY AISATLLISA APCFILMFIP 180
  181 IQANTSESGP LLKVLLAFGS GGLLGDAFLH LIPHATPAGD GHGHSHSHGH SHGGGGHSHG 240
  241 AHDMSVGGWV LGGIIAFLTV EKLVRILRGE DGHGHSHGHS HGGEKKETKE KDSKDKVAKK 300
  301 EEKPEKDEQS IKVTAYLNLA ADFTHNFTDG LAIGASFIAG TTVGIVTMIT VLVHEVPHEI 360
  361 GDFAILIQSG YSKKKAMLIQ LVTALGALSG CVISLFSADA DALADAAASS WVLPFTAGGF 420
  421 IYIATVSVIP ELLENSSFFQ TVKEIFAILT GIFLMYLIAI YE