YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41144
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.87
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.96
Transmembrane Helix	7	26	0.92
Non-Cytoplasmic	27	61	0.93
Transmembrane Helix	62	84	0.93
Cytoplasmic	85	92	0.89
Transmembrane Helix	93	114	0.93
Non-Cytoplasmic	115	120	0.82
Transmembrane Helix	121	142	0.92
Cytoplasmic	143	153	0.84
Transmembrane Helix	154	177	0.88
Non-Cytoplasmic	178	183	0.87
Transmembrane Helix	184	205	0.93
Cytoplasmic	206	269	0.98
Transmembrane Helix	270	292	0.93
Non-Cytoplasmic	293	306	0.81
Transmembrane Helix	307	327	0.92
Cytoplasmic	328	334	0.91
Transmembrane Helix	335	357	0.93
Non-Cytoplasmic	358	363	0.91
Transmembrane Helix	364	387	0.87
Cytoplasmic	388	403	0.85
Transmembrane Helix	404	425	0.89
Non-Cytoplasmic	426	432	0.86
Transmembrane Helix	433	455	0.92
Cytoplasmic	456	490	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGETPSFRML IVAVITSMAG SFHYGYNLVL TNPSQDAFLS FMNQTFAKRF DGGLSDHTLQ  60
   61 NIWSFVVAVL FLGALAGSFS IPFIAEGVGR KNGLYISISV GVLAGGMSIA SKFIPLFELY 120
  121 IISRVVMGWS VSVSLGLSGI FLSEASPKQN RGAIGMMTGT AIQLGTVVGS VVAMPQIFGT 180
  181 DDLWWVIYAT EIGIMLVFGA ALPFFPESPG YLIQKGSLES ATISISFYYK CEKEEADKHV 240
  241 KEIQKEQMNS TKKFTMLDVI QQKSLRDKAF VGAVVTFVMS FSGVAVISAF AFEILVNTGL 300
  301 NVLQASLAND ATTIVSVISS VLAIAIIDKN GRRPLLLISL AGILICNLII FGLMFTFDKF 360
  361 GNQVLGFILI FFICIFQFFF ALGPGPLSYF INAELVGQDA RSAAQSWASV VQMISQFSII 420
  421 TAFLPMKNQL GEAWSYLILF VAPVAVSLVF LYFSLPETKN KSPIEVEEAI EELPKLPLCR 480
  481 STRSNSIKPI