YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE41464
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	23	0.93
Transmembrane Helix	24	45	0.91
Non-Cytoplasmic	46	78	0.96
Transmembrane Helix	79	99	0.94
Cytoplasmic	100	108	0.88
Transmembrane Helix	109	130	0.94
Non-Cytoplasmic	131	135	0.84
Transmembrane Helix	136	158	0.92
Cytoplasmic	159	168	0.83
Transmembrane Helix	169	189	0.91
Non-Cytoplasmic	190	198	0.79
Transmembrane Helix	199	220	0.92
Cytoplasmic	221	293	0.98
Transmembrane Helix	294	316	0.92
Non-Cytoplasmic	317	328	0.88
Transmembrane Helix	329	351	0.90
Cytoplasmic	352	358	0.93
Transmembrane Helix	359	381	0.94
Non-Cytoplasmic	382	387	0.89
Transmembrane Helix	388	411	0.86
Cytoplasmic	412	428	0.82
Transmembrane Helix	429	450	0.91
Non-Cytoplasmic	451	456	0.95
Transmembrane Helix	457	479	0.93
Cytoplasmic	480	500	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSSGGNVAI IATQRAKKWP PIRTSLMAII VAFGSSFSFG FQLLITNPAQ GAFIKFLNAS  60
   61 KHSNNPDDNE LSHLENEWSF IVAIFFLGSA TGAFLIKTVA ERFGRKKGVI VSLFAQVTSS 120
  121 MLTIVSFWIV NHILFIFARF LMGVGITISM GIAAMFVTES SPAYCRGVSS LINGVLLQLS 180
  181 ITVGAVMAMP NVLGNETHWW YLYLFQLIIN TTVLVILPWV HESPSYLASQ DIKHHELHAM 240
  241 FKAKIVASVK FYHGISDPEA EVFADNLIET HQITRSQESI ISVWKSPFNR RGTLLGMMVT 300
  301 FSMAMSGITV INAFAFEILM NVGMKQDTAA IANAAICFFS FAGILVSTKI IDHFGRRPLL 360
  361 ISTFGCLAVV NVVIVGLMYT FAETQNQIVS YFLISAICMF NFLFAMGPGP LSMFITGELV 420
  421 PQNCRSASSV WTNAVMAVVR FLILTFYLPV KNMTSEFMAY AIFFVVPMIV AVLVIFFLLP 480
  481 ETKGRNVEEI REEYERKSLL