YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40516
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.80
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	20	0.92
Transmembrane Helix	21	42	0.80
Non-Cytoplasmic	43	76	0.86
Transmembrane Helix	77	99	0.84
Cytoplasmic	100	107	0.81
Transmembrane Helix	108	127	0.94
Non-Cytoplasmic	128	137	0.68
Transmembrane Helix	138	157	0.88
Cytoplasmic	158	171	0.75
Transmembrane Helix	172	194	0.90
Non-Cytoplasmic	195	200	0.76
Transmembrane Helix	201	221	0.92
Cytoplasmic	222	253	0.95
Transmembrane Helix	254	277	0.86
Non-Cytoplasmic	278	300	0.88
Transmembrane Helix	301	320	0.91
Cytoplasmic	321	328	0.86
Transmembrane Helix	329	347	0.94
Non-Cytoplasmic	348	355	0.75
Transmembrane Helix	356	378	0.87
Cytoplasmic	379	393	0.88
Transmembrane Helix	394	416	0.91
Non-Cytoplasmic	417	427	0.87
Transmembrane Helix	428	448	0.96
Cytoplasmic	449	499	0.99

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MPRIRPRSGN EDFLTRITGE TWTRNQYIVF IHTFFSFAMI HATRKTLATV KPSIIHTWTS  60
   61 NSTGTPFMES EEHATRFLGV LDTSFMITYA IGLFVSGTLG DHYNPRKMLS FGMAMSAISV 120
  121 FCFGFLTEKY HFYSAPLYIF LWICNGFSQS VGWPIEVAIM GNWFGKDARG TVMGIWSACG 180
  181 STGNIIGTLI ASHALSLGYE YPFLIICSLL LGYSMIVYWQ LPSAPWDIDH SFPHDSENKE 240
  241 KQELLPNRPP ALGFFKTWLI PGVISFSLAF ACLKFVNDGF FFWLPYYLHD GLNWPETFAD 300
  301 ALSTWYDVGG ILASVVAGAA SDRMKSRTSL IFYMLIASFV SLYIYSQSPA SYSWNAFLLL 360
  361 VTGFCVGGPL NMISSSVVAD LGKSDKLKGN AEALATVTGI IDGTGSCGSA IGQFMIPNLQ 420
  421 HWYGWNSVFY GFMAMMACTT ICITPVLIKE KRKRHKLKAR EDKALLNSDS DSNSDSEDDL 480
  481 LLNDQTTRRK HHGTTNSFI