YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40408
Protein type:	Transmembrane
Type Confidence:	0.73
Topology Confidence:	0.60
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDDPNRIVSA SRRPKALIRL LDSQQIEVVL HSRLSVEDVL RLVAEKVDLS FPDSQYFCLG  60
   61 FSDNLNNFHW LDGSVILYDL VASTSNPKGT LTLSHHVRFF VDTIYEVQCA STAKLFFFDI 120
  121 HNQLARHELL VTSEDYFELV AILVSVFVPD CQEHTTAEAI SRIMPMSHPP YILLKTDQSE 180
  181 VERRVFEKFR YYRRLPVGTG MISFIKLAEK SESYGYRMYE ALNENNDKCI LSIGYKGIYI 240
  241 YRRSRHQNLI TPYLAYPWRV IDNLYYRDKK FSIEIREPKK NESSENVSDD VILINDRQLS 300
  301 EAFSHPTTQV SCGRRRSNNQ QPRVLLFPFT CQTPLVCRTV WMSAIAQHRF FLERKELKKV 360
  361 SGDLLFFLPF LFRQSVLLLV FQSPFRPGGA HFAQKA

Type	Start	End	Confidence
Non-Cytoplasmic	1	323	0.91
Transmembrane Helix	324	342	0.60
Cytoplasmic	343	362	0.56
Transmembrane Helix	363	381	0.62
Non-Cytoplasmic	382	396	0.82