YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	twk-9
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCSFHIPEK YQWASTLFVH VALIAGVAVY TVFGALSMQW LESPDRVRAL LKRELKPVES  60
   61 LPPPPSISGL PDRITRVYLG EELAILDPGV HECLERTILT LFHDTKCDPY SFEHLNIELI 120
  121 DRCYAEANVP IPEGYGGQPR KKIKNKEEEK DVIDETPAEK WSIGNSVIFA FTVITTIGYG 180
  181 HVAPETFEGR LFLIFYGVIG VPFTLLTIAD LGMFLTRFLK NLLTMARRFA HYLVKLYQKA 240
  241 KKQRNKSQKT SPVMPDSERS EVWNTGKEMK EMSMRTAREP GEGDEIEVIE NGNDENGKEE 300
  301 DEEEPENNEP RKTEESIALG ITFTCYLVAG AKILSVYEPE MDFFKALYFN FVTLTTIGLG 360
  361 DFVPKSFDYL LITLIYIGIG LALTTMAIEI AADLLKKLHY IGRKMENVGQ AVVWFGGKKM 420
  421 TMKSLVKHLG DQFNIPEEEL ANFDMSAFVD NAIKVEKGEI ATLRKPPTPP VVFRERAFSF 480
  481 SNVRNSSESA LKYVDDNRFS KTTQPTIYTV IIHETTRTID TLHNLADAIR RDPSIPRLDL 540
  541 DVHYLTDMSA PTSFDENYLR TYTNARRK

Type	Start	End	Confidence
Non-Cytoplasmic	1	16	0.88
Transmembrane Helix	17	40	0.86
Cytoplasmic	41	162	0.93
Transmembrane Helix	163	183	0.89
Non-Cytoplasmic	184	191	0.88
Transmembrane Helix	192	218	0.84
Cytoplasmic	219	343	0.85
Transmembrane Helix	344	363	0.56
Non-Cytoplasmic	364	369	0.68
Transmembrane Helix	370	395	0.82
Cytoplasmic	396	568	0.83