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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: ptr-6
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.66
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRCRIPTLDK KLEKVFAWYT KHLLVDYYYV FLIAPVILTA ICSCGFYWIK ELTLLDARKL  60
   61 YTPVSAPSWK EEQVFSELWP VKSYEFLPER TFQWNRYLYL VVHGRPYENG TYPNILEGSY 120
  121 LNDIAKIEEE LVTNVSFPRE AALEDNPALM RKRHLNETEI EENRNITITF KDVCMNWYGD 180
  181 CYREKNVIEL LKRRHELNKR GISVTFPQVN QEGTPIYIAF VIGGVDTYPN DTIKYARAMR 240
  241 LWYFLKFDDE EQEQLAKFWE DTAEKFVRET YADHPTIQCH IKHSRIVDQG LTRNANRLKP 300
  301 YFNVTIAVLV LFTAFYSVKW YFRMDHSWPL HIDWLRSKPM LALGGVLSSV LAILSGIGLL 360
  361 LWFGMFFAEI TLIAPFLVLS IGVDDMFIAV AAWHNTEMKY PGRSPKVMKK RMIEAMSESA 420
  421 VAIFITSFTD VLSFGAGTIT DIIAVQGFCA MTAACMFFTF LYQITFFAAL MVISAKAQMS 480
  481 GRNSCMPCIT AGDIYTIEDG SLQPNLKKKK SKSRKDAKAE KEKKDEAKND KNMEIEENAE 540
  541 NAEKSSYDSS PDPSQIHIPV KSRGAMGHFF RDYYVPWLLN WKTKLFMFVT FIIYLGISVY 600
  601 GICVMEQGLD YDKLLLHSDP LVEALKREIE LFHGGDQIEI AIQNCPNITI AESRDRIELV 660
  661 AQEFENISYS LGGKGTSFWM REYKKYSNLT GSYLNDNRES WIVGVYEWSQ LFAFYKLWSQ 720
  721 DFVWANESDY DTLELKSYRF RIGVHRLSTP TDLVLITEEL RGVADRHPDL NIVTYQQSRA 780
  781 IADQLNVILS STITNDTLAM FCMFCVALIF IPNPICALFI TFAMVTIDIG VIGFLSLWSV 840
  841 KLDPISMITI IMSIGFSIEF SAHITHGFVS NDSNLSAFDR CVDAMEKLAW PVVHGSLSTI 900
  901 LGVFVLAFID SYMVLVFFKT ISLVLIIGAW HALMLLPILL SMCIPVIERL SDASKKASDR 960
  961 RRKLKENKNS VYAINLPVNV SS

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle