YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	ptc-3
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.50
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	98	0.75
Transmembrane Helix	99	121	0.76
Non-Cytoplasmic	122	625	0.70
Transmembrane Helix	626	645	0.93
Cytoplasmic	646	659	0.53
Transmembrane Helix	660	682	0.90
Non-Cytoplasmic	683	689	0.54
Transmembrane Helix	690	711	0.62
Cytoplasmic	712	735	0.81
Transmembrane Helix	736	757	0.84
Non-Cytoplasmic	758	766	0.75
Transmembrane Helix	767	788	0.94
Cytoplasmic	789	866	0.94
Transmembrane Helix	867	885	0.50
Non-Cytoplasmic	886	1141	0.52
Transmembrane Helix	1142	1164	0.90
Cytoplasmic	1165	1168	0.43
Transmembrane Helix	1169	1192	0.86
Non-Cytoplasmic	1193	1196	0.47
Transmembrane Helix	1197	1221	0.79
Cytoplasmic	1222	1238	0.50
Transmembrane Helix	1239	1259	0.88
Non-Cytoplasmic	1260	1267	0.48
Transmembrane Helix	1268	1293	0.85
Cytoplasmic	1294	1367	0.61

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFPDEETDL LSEAKHCIRN VIHRTHRKFL ENRLIGNFDS EDFSDAWKKK FAHAPTWCDA  60
   61 DMSLQQIKRG KAVGNTVALT ARAFFQLWLF RIGCFVQRWA WSTIFISLFL YCLCLGGLRH 120
  121 VTIETDLVKL WVSEGGRLNE EMGYLGQVKF ERESGHLVHK VKRAVEQTTE PPAPAVKAEV 180
  181 RRGPELPKEN GLGGGFQVVI QTPSFDGQNI LSKEALQQHT KLMEEISTYE VKMFNETWTL 240
  241 SDICFKPPGP SFNSGPLAGI MSKLLDKIIP CIWITPIDCY WDGAKPLGPN PPLNLGPEVA 300
  301 SFVSSLPPGN VTWKNLNPTS VIKEVGTLFD LGPIGNFFER AGIDGAYLDR PCIDPLEEEC 360
  361 PKSAPNYFDR CHALTKFNEW NMAKAMSEQV TLERKIIPKD DGKSDIAETI LNDIFGKKRR 420
  421 KRQADTTTKK PATKKDEDYY EYEDDADYLA GIANSTIAKK NPEKEAKDLL CLEYGSSLLK 480
  481 WMQENPERLG EFLTKEEMPD YPNYGDVMTG GCKGFGKKIM EWPEDLIIGG IQRDNGKLVS 540
  541 AEALQSVFLV SGAYDVFARI KNDKTDSHPG LDRHHFQPWM AGEIISTWQR NFTKRLYSHE 600
  601 LNRERRQFHP LASTSIADML EEFSQFNYII IVIGYILMVI YAAFTQGRFQ GWWLAVQSNV 660
  661 ALAICGVILV TISSICGLGF ATHLGINFNA ATTQVVPFLS LGLGIDDMFL LLHNYDEIIN 720
  721 ICNKNEIGVL LKETGMSVML TSINNILAFI SGYVLPIPAL RSFCSQTAIL LAFNLIFLMF 780
  781 IFPAMIGIDL RRQRKGKRDL AYCSRGNPQM ATSQSVPSNV SNMSSRAELA GYEKQADEYK 840
  841 RHEPWYTVGG FLNKIYIPAL KNNVVKACVL IGTTTAVVFG LYGMYTSTLG LELADVLPEH 900
  901 TPPAAFLRAR EQYFSFYPMF AVLRGDKLDI PNQQQLIEEY RAQLGSSKFM IKAEGKLQPY 960
  961 WMSMLRVWLQ SLDMALEKDL AAGKFDLTNG NPIKVNGEKP SPESMIAARL VCSFGTNYNC1020
 1021 DGRLGKMKMV ENEVINPEGF YNYLTGWFNV DNMMYYVSQA SFYPTPPGWE YNEKLAKVVP1080
 1081 AAEPLLYSQM PFYQNDLIDT PAIVKMIEEI RATCEEYSER GLSNHPSGIA FTFWEQYLTL1140
 1141 RWNLFQAICI IALAVFCVIS ILMFNPWAAT LIMCIVVITT IELGGFMGLM GIKMNPISAV1200
 1201 TLICAVGIGV EFTAHVELAF LTALGTIDQR LESCLQHMFV PVYHGAISTF LGVVMLVFSE1260
 1261 FDFVVTYFFY TMTLLVALGV FNGLCVLPVI LTLVGPKPEL TPTDGSSVLP PPPPLRQQYA1320
 1321 EKSGGVEGGM RKRKEKRPAE VEMSARDSPS TSSASHSSDD ESSPAHK