YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CE40035
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.90
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	31	0.98
Transmembrane Helix	32	52	0.96
Non-Cytoplasmic	53	74	0.85
Transmembrane Helix	75	95	0.94
Cytoplasmic	96	102	0.85
Transmembrane Helix	103	123	0.92
Non-Cytoplasmic	124	128	0.79
Transmembrane Helix	129	150	0.92
Cytoplasmic	151	160	0.82
Transmembrane Helix	161	180	0.95
Non-Cytoplasmic	181	208	0.92
Transmembrane Helix	209	231	0.91
Cytoplasmic	232	264	0.94
Transmembrane Helix	265	285	0.90
Non-Cytoplasmic	286	300	0.86
Transmembrane Helix	301	321	0.93
Cytoplasmic	322	329	0.83
Transmembrane Helix	330	351	0.91
Non-Cytoplasmic	352	358	0.85
Transmembrane Helix	359	381	0.95
Cytoplasmic	382	390	0.91
Transmembrane Helix	391	413	0.90
Non-Cytoplasmic	414	421	0.72
Transmembrane Helix	422	443	0.93
Cytoplasmic	444	471	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSCFTCSSFF GRLPMETDDP ILKRLPRGAR PWAVLVGGVM CMVTFGIVYT CGNLLPYLVS  60
   61 YFRWKMYPDM RTGQLIWLQT LLSGLPMGMV IGGLVERKFG GRAGALLGSI IYTIGVGSTF 120
  121 YSIQHSYAAT LLTMGGIASV GSSIAYSSIL PTAQRWFPDN VGLAGGIIIG GYGCGAFILS 180
  181 PLQTTFINPL DYRVNDQGFF TQEDLLERVP YVFIVMSIFF TVFQSIGLIF IGQPEGDIHV 240
  241 ETENLIGTNS EIRVEQARVW PQLRTTTFLV LFLSLTCNAV WVQLTSGLYK AYGQQFIDSD 300
  301 FFLSLIGSIS SIFNAGSRVF WGAIADTTSY QFSMSIVCSL GAVLAFSMPL VKMVSNDVLF 360
  361 LATVCLMFSC IGGTFSIFPY ITHKCFSKAN FSVMYGFLQC AVSVAGLIAG LISTHALSEI 420
  421 GFEYLFIVCG CFMLTSLFLT FIVHKTDLAQ LLVSAEREHL EEDENGYQVY Q