YRC Logo
PROTEIN SEARCH:
Descriptions Names[Advanced Search]

View Philius Transmembrane Prediction Details

Prediction Overview

Protein: abts-1
Protein type: Transmembrane
Type Confidence: 0.99
Topology Confidence: 0.62
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEEETDEESP AKIARSRSCE PPGSSSRSRE SRGSLWMSMG VHVENSRRRR MSKARRESQS  60
   61 IELSSLAPGT RVMFLLKEKE NTPALFTEMG ELNNEEWRET ARWVKFEEDV EQGGNRWSKP 120
  121 HVATLSLHSL FQLRSCIMNG HFMNDLAETD IPSIFNAVIE NLEKSGDLPS ENREELREIL 180
  181 LRKHVHQYEQ AKKNGAGGEK GGFLSTVRSI SDIGKSFSHG KNLSKIEEKP EGPVTSQTAG 240
  241 APSGSSNQLT LPTVESVPKD ISSEESSKGN LHFLKKLPAG VEASNVLIGE VDFLTRHICC 300
  301 FIRLKNANQL GDLTEVPVPT RFIFLLLGPT GHGQQYREIG RAIATLMADE IFHDVAYGAR 360
  361 DVDDLLDGID EFLDQVTVLP PGEWDPNIRI EPPSKLPSQE KRKQIGQELL VEPSSHKHVK 420
  421 KVVEEEEIHS HGDDPALKRT GKLFGGLILD IKRKAPHFVS DFTDAFNLQC LASICFMYFG 480
  481 LLAPIVTFGG LLEEATHQRM AAMENLFGGA LCGVIYHFFA GQPLTIVGST GPVLVFETIV 540
  541 FDFCHRFGIV YLSFRFWVHV WTAVIIFLMV VTDASALVSF ITRFTEESFA TLIAVIFIYE 600
  601 AIMKLVKIKG QLDMINYSRD FVEGGFCSCV PPIGKPSVSP DHARLVIKST GLPIAFNDTF 660
  661 IDYTAANLTD CRTIGGSFDG TTCFPLYDKL LMSILLTVGT FFLATTLKKM RNSCYFPSSV 720
  721 RQLLSDFAVM IAIASMTFVD IFVGVNTPKL NVPSTFRPTW EGRGWFIPPF DANEWWTAPL 780
  781 AILPALLACI LIFMDQQITT VIVNRKENKL KKGCGYHLDL LVLSVSILMV GFLGLPIYVA 840
  841 ATVLSINHIN SLKVESECKA PGEVAQFVGV REQRVTGIVT FLIIGLSVLA TNILGRIPMP 900
  901 VLYGVFLYMG ISALGGIQLF DRTLLLFMPM KYQPDTIYIR HVPIRKIHLF TAFQIGCLAL 960
  961 LWVIKSIKST SILFPIMLVV MVAIRKMMEK AFTTTDLKYL DDPMPDFHLR KKEDAKRRQS1020
 1021 EGEAVEIEFD NENQATIHAV KTEAHLHIPM ASGNVIKIPL AAIQEPSHSI NLTKEVNNSG1080
 1081 MWKHITSVDS KNSLVRDVPA SSDPTSSRDA PIEQPEDDDD PIMIKVIRPS PHTSTSNLTT1140
 1141 ENTPLLKDEE PPKTNPDEPK V

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle