YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	pgp-2
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.55
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	53	0.87
Transmembrane Helix	54	78	0.80
Non-Cytoplasmic	79	119	0.81
Transmembrane Helix	120	142	0.85
Cytoplasmic	143	195	0.88
Transmembrane Helix	196	214	0.85
Non-Cytoplasmic	215	217	0.61
Transmembrane Helix	218	238	0.87
Cytoplasmic	239	297	0.97
Transmembrane Helix	298	320	0.89
Non-Cytoplasmic	321	336	0.89
Transmembrane Helix	337	360	0.89
Cytoplasmic	361	704	0.99
Transmembrane Helix	705	729	0.91
Non-Cytoplasmic	730	746	0.94
Transmembrane Helix	747	772	0.84
Cytoplasmic	773	821	0.98
Transmembrane Helix	822	843	0.93
Non-Cytoplasmic	844	850	0.66
Transmembrane Helix	851	869	0.96
Cytoplasmic	870	931	0.96
Transmembrane Helix	932	954	0.87
Non-Cytoplasmic	955	1272	0.55

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGKDTEKTPL LLKSLDKQRS QTSLSSHSSD SSIDESTVKL TNYGIFYYTQ GVDLLLLITG  60
   61 TVAAVIHGAG FPLLAIVLGG MTTVFLRAQN SDFVVGVDNV NPEGLVPISL DEFNSEVVKY 120
  121 CIYYLVLGVL MFFTSYVQIA CFESYAERLV HKLRQNYLKA ILRQQIQWFD KQQTGNLTAR 180
  181 LTDDLERVRE GLGDKFALLV QMFAAFLAGY GVGFFYSWSM TLVMMGFAPL IVLSGAKMSK 240
  241 SMATRTRVEQ ETYAVAGAIA EETFSSIRTV HSLNGHKREL DRFYNALEVG RQTGIVKYCY 300
  301 MGIGVGFSNL CMYSSYALAF WYGSTLIIND PTFDRGLIFT VFFAVLSGST SLGGALPHLA 360
  361 SFGTARGAAS TVLRVINSHP KIDPYSLEGI LVDNMKGDIS FKDVHFRYPS RKDIHVLKGI 420
  421 SLELKAGDKI ALVGSSGCGK STIVNLLQRF YDPTKGRVLI DGVDLREVNV HSLREQIGIV 480
  481 SQEPVLFDGT IYENIKMGNE HATHDQVVEA CKMANANDFI KRLPDGYGTR VGEKGVQLSG 540
  541 GQKQRIAIAR ALVKNPKILL LDEATSALDT EAEREVQGAL DQAQAGRTTI IVAHRLSTIR 600
  601 NVDRIFVFKA GNIVESGSHE ELMSKQGIFY DMTQAQVVRQ QQQEAGKDIE DTISESAHSH 660
  661 LSRKSSTRSA ISIATSIHQL AEEVEECKAP PTSMFKIFKF NGDKVGWFIG GIFGAFIFGS 720
  721 VTPVFALVYA EIFNVYSLPA DQMQANVYFW CGMFVLMGIT FFVGFFTSAN CLGRCGESLT 780
  781 MKLRFEAFKN LLRQDIAFYD DLRHGTGKLC TRFATDAPNV RYVFTRLPVV LASIVTICGA 840
  841 LGIGFYYGWQ LALILVVMVP LLVMGGYFEM QMRFGKQIRD TQLLEEAGKV ASQAVEHIRT 900
  901 VHSLNRQEQF HFTYCEYLRE PFNTNLKHAH TYGAVFAFSQ SLIFFMYAAA FYLGSIFVNQ 960
  961 QAMQPIDVYR VFFAISFCGQ MIGNTTSFIP DVVKARLAAS LLFYLIEHPT PIDSLSDSGI1020
 1021 VKPITGNISI RNVFFNYPTR KDTKVLQGFT LDIKAGKTVA LVGHSGCGKS TIMGLLERFY1080
 1081 NQDKGMIMID GDNIRNLNIS SLREQVCIVS QEPTLFDCTI GENICYGTNR NVTYQEIVEA1140
 1141 AKMANIHNFI LGLPDGYDTH VGEKGTQLSG GQKQRIAIAR ALVRSPSVLL LDEATSALDT1200
 1201 ESEKIVQEAL DAAKQGRTCL VIAHRLSTIQ NSDVIAIVSE GKIVEKGTHD ELIRKSEIYQ1260
 1261 KFCETQRIVE SQ