YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	inx-21
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.67
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKAAVTSFT DPLKRIRGLE SGTEKLLHNT TIAILVFLFI LLASKPMFGS PIVCQVPKDW  60
   61 PSSSVDYFTD ICYYGQREKV DIQHRISRAG GRGTVTVNLT TGTSEFYMWV PLVPILLVAL 120
  121 CLLPAFFWKF VGLDCFNGMD IVSFLEFYEQ TDDPGERLVE MEGWRRRKLA AQLNKWIMAK 180
  181 RNFFCGLSQT MIIYVLMKWF RTILFIAQFW IIADVFGDGN FFWGYADLAR IANGDSINPL 240
  241 KGSFTLISGC RVQRLAMSIG FYRSYTNAHS AVARCMLSAN FLNAKAFLVL YWWFLLVSFI 300
  301 SLCSAIHYTI ILLVPQYRRH EFKSMIRTED HFIERYGEPH PNLHLGKEAP LEYLVEHLGN 360
  361 DGFLVVEMVY DMLHHYECDR FTEHIWMHII VHNGEEDFED DEIENKKIKI VDEMEMDGAG 420
  421 DRNSGGIDKK ETNDWSSSAG TSKNKDSTSK VSLSASQPSM MMSESDEEPM ISPAVFTSLS 480
  481 S

Type	Start	End	Confidence
Cytoplasmic	1	25	0.95
Transmembrane Helix	26	43	0.94
Non-Cytoplasmic	44	107	0.94
Transmembrane Helix	108	131	0.87
Cytoplasmic	132	189	0.91
Transmembrane Helix	190	217	0.67
Non-Cytoplasmic	218	288	0.64
Transmembrane Helix	289	314	0.86
Cytoplasmic	315	481	0.71