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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60464286
Protein type: Transmembrane with Signal Peptide
Type Confidence: 0.91
Topology Confidence: 0.91
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKILTTILFL FIFYFGNFSN SQFAPLSPES TIQASVVNIN PTYVYSPASS EHSYCQYKSY  60
   61 QIYITAQSGF SITGAITNNT NFSIEKEFQK ENSYMFILAT QYNQNFGINY QVITFSTNDT 120
  121 IDHTYQLTLT CNDFQFDKLN ISEYLTPIYL YSSFLYYISL TGLEKSDQAV GIRLKNSYGS 180
  181 VIVTGESRFN YLLQIYQFNQ QNITDDLDVT FDFGNDRNIS FKLKSYYSQF NQVDLPTSHI 240
  241 ETFYPPEILS TEYNFNQFGS SCNPVVQSTI NTNIARPYQY YFFMYSPIYS LPIKGTKGNM 300
  301 TYIGSIMGGS TLVTANGYSS IDSTVYNPNI TDLNIPMMGP TSTYLSQENT EALINSLSFY 360
  361 NGYQYQGTDL FLYIYGVTVY QSWPYGFYSG NNANYEFKTS FNRLKETSPT ASNYFYIGSS 420
  421 SSNIEIYQSL TFPTKVSTPP QLISYRYTKV SDYMYILSLK IESSSGVRSI NTYSPLNAFG 480
  481 SGTLVSGTIY DGVFEIVGTP DQLLYVSIYD QLGNGKDYNP GDVISIDPLV IFDLPLEIKF 540
  541 VLNITNFNIT FLKNNLDLTD NSYNIMYIDF NDYVPIKKSL SLLLIDIISF PVERDSSDSD 600
  601 GMIVKLPFKY NAQTKKYECK FIVPKNNMFG KILYTVFYGN LLGIHSNELI EPLIANNTIL 660
  661 DNQGPLFSSF EKIGNGSIIS TTGTIGWRFN ITDDLNGFES GYIKVMGSID SSTYHFNFTI 720
  721 DDVIGDKFNC QYQILINITQ PCISQEYRII KVILFDTNKI ASRFYLYTPI LANAAILNPF 780
  781 LNLLNKGIDI TIVPFECSDS TLVDSKPSLL SFTPSTSVID VGATNRTISF DFSFGTSTST 840
  841 IKQDQLPIVY INSLFSGLVE CRDTILISYN NVEVVYKCST ELPIGFGYPN QLIFSIYGIV 900
  901 NNGGYFYGYT PKDLSTVTSG YYANTTYSFN QPTIKSTDRF YSDDNDLVLY GRGFSNVIQV 960
  961 NIVYRDGTLA PHSFPPLVVY ESSAIKISGI KSTNKPFDIT FSTSDTLTSN IYTVNPIYFN1020
 1021 ATIPPTPTES PSPTPTTTTT PTTTPIPTTT PIPTNPPQKC LGNPECGGKT QGFCSPTGCI1080
 1081 CYSPWIGTTC TSQIIIVPQP SINTTNPNVE IPTDNIGQSS ETNSEESQKM IFKSLISLVS1140
 1141 LRELDFNNKE VNNYKFDQWI YTPINEFKNQ YFTTVSNTNI TATLEWFNQS TPIQFANQNL1200
 1201 TMNPSSIKYT IEITEYQFKS SLNQLQLVMA ASLTTNSNDI CTLNQFGNTS TGDDSNYLKI1260
 1261 QIENHSLYGR FIKRAIIDNT VKSISNVLLD SSLNVIDSSS SSLQSFIGIT IPNYKNSIVV1320
 1321 DPDFSVLIDS KSASDEDDSV CTKNNSGLTT AQLAGIIVGS IAFAAVIVIA TVYAITKSKK1380
 1381 QKKFEMSINN KLNKLNNNK

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle