YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465398
Protein type:	Transmembrane
Type Confidence:	0.94
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDLNINININ NKNKNKSIEE IIDILSLEFQ QKPLESDFLL SLFYTTIFHR KSYILCNPFP  60
   61 PSFIDIPTTT QNKTSTITQP QKNFESLRSA FSQLPNVNSL SNKETLSKLS HQTLQALYFI 120
  121 LKSSDGISVK FIDYKKFERK HGFLKDSPDH LKISHKPSFV FKVKYNVNSN NNNNNSNNDN 180
  181 SFCSSSNNNI NCNNNNSNNN NSVLVSSYHE KRHRKFKELE KEKGSMLGYH GSANENWFNI 240
  241 IKGRGFSHQF VSEECLFGKG FYFSSDSKVS TTFIKWGGNG SSSSSSSKNN NNNNNNNNNN 300
  301 NNNHISELWW PNSMWAKKKI GFLSACTLIN TIETARGIEV MATNHHQSPH VFTEKDRSLP 360
  361 PCYILADNSE DIRVKYMLLF SEDISNNNSK NNNIKQQNTK PILINQHHHQ QHQRQQPMID 420
  421 INRNSDDGSS NDTFIQRANN ANDSIMVKLR PLFRFLMVVL VVFAAHFLLN TFKTASKKSS 480
  481 ISHKGVFY

Type	Start	End	Confidence
Non-Cytoplasmic	1	451	0.86
Transmembrane Helix	452	472	0.86
Cytoplasmic	473	488	0.77