YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60465701
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.86
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	42	0.99
Transmembrane Helix	43	66	0.86
Non-Cytoplasmic	67	78	0.77
Transmembrane Helix	79	102	0.89
Cytoplasmic	103	121	0.91
Transmembrane Helix	122	144	0.91
Non-Cytoplasmic	145	158	0.87
Transmembrane Helix	159	180	0.92
Cytoplasmic	181	187	0.82
Transmembrane Helix	188	207	0.95
Non-Cytoplasmic	208	227	0.86
Transmembrane Helix	228	250	0.86
Cytoplasmic	251	264	0.84
Transmembrane Helix	265	286	0.92
Non-Cytoplasmic	287	317	0.88
Transmembrane Helix	318	340	0.86
Cytoplasmic	341	368	0.89
Transmembrane Helix	369	389	0.91
Non-Cytoplasmic	390	404	0.82
Transmembrane Helix	405	425	0.92
Cytoplasmic	426	437	0.83
Transmembrane Helix	438	461	0.86
Non-Cytoplasmic	462	467	0.89
Transmembrane Helix	468	490	0.93
Cytoplasmic	491	506	0.94

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLENSNIVN FQKEGAIIEN EGINSSHEED NHSHYDGLKK NTIGVIECIA LSVGGIGLSA  60
   61 ATFFVYPNIA ASAGTSVPFT IFFGALCCLT VANTISIFGK YISSSSSFFV YITKGLGNEM 120
  121 GFLSVWILMI GYLAIMMSAM FMFVGSLSDV ITRHSDFHCP WILSLLIVVT IIPTLAYIGI 180
  181 DVVLKTSIIA MILETLVILG LSFTIVIKGG DQGNYPLAFT PVGEYSGGVS GIATGLVYCT 240
  241 FIFVGFEGAA TLGQETRNPK KNIPIAVFGS IAFAATWFIW AMYALVVAAG PSNIFSIDTN 300
  301 EFPVGIYAKR YIGFWYSVII DIAGVVSTFG VISSWFNIVF RIIYSIGKTK EKGIISWFGR 360
  361 TNQKFKTPHN AIISLTGFII LMSSIIVGST KSIYTESSWE VYNYISFTGT IPIILIFIIS 420
  421 NIAVIRYVKV YQSKDFQLFR HMILPIFSAI LFTVILGGNF YPSPKYPIPY FLIGLGILLL 480
  481 MGVCVMFFLY RFNKEYLKNM LYQMSL