YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	STT3_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.62
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.95
Transmembrane Helix	40	62	0.81
Non-Cytoplasmic	63	103	0.82
Transmembrane Helix	104	125	0.87
Cytoplasmic	126	133	0.68
Transmembrane Helix	134	156	0.68
Non-Cytoplasmic	157	166	0.61
Transmembrane Helix	167	187	0.77
Cytoplasmic	188	193	0.69
Transmembrane Helix	194	227	0.62
Non-Cytoplasmic	228	231	0.54
Transmembrane Helix	232	252	0.87
Cytoplasmic	253	259	0.86
Transmembrane Helix	260	281	0.93
Non-Cytoplasmic	282	290	0.80
Transmembrane Helix	291	310	0.94
Cytoplasmic	311	324	0.88
Transmembrane Helix	325	347	0.93
Non-Cytoplasmic	348	382	0.94
Transmembrane Helix	383	403	0.91
Cytoplasmic	404	408	0.87
Transmembrane Helix	409	426	0.91
Non-Cytoplasmic	427	431	0.66
Transmembrane Helix	432	453	0.92
Cytoplasmic	454	472	0.92
Transmembrane Helix	473	494	0.93
Non-Cytoplasmic	495	714	0.97

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKRSEKSSTS VVSNNKQQDV NIISSNEVGV KEENKGHQEF LLKVLILSVI YVLAFSTRLF  60
   61 SVLRYESVIH EFDPYFNYRS TIYLVQEGFY NFLNWFDERA WYPLGRIVGG TIYPGLMATA 120
  121 SLVHWSLNSL NITVNIRNVC VLLSPWFASN TAMVTYKFAK EVKDTQTGLV AAAMIAIVPG 180
  181 YISRSVAGSF DNEGIAIFAL IFTYYCWIKS VNTGSLMWAA ICSLAYFYMA SAWGGYVFII 240
  241 NLIPLHAFFL LLTGRYSHRL YIAYSTMFVI GTILSMQITF ISFQPVQSSE HLAAIGIFGL 300
  301 LQLYAGLSWV KSHLTNEAFK KLQRLTVLFV LSCAAAVLVV GTLTGYISPF NGRFYSLLDP 360
  361 TYARDHIPII ASVSEHQPTT WASYFFDLHI LVFLFPAGLY FCFQKLTDAN IFLILYGVTS 420
  421 IYFSGVMVRL MLVLAPVACI LAAVAVSATL TTYMKKLKAP SSPSDANNSK ESGGVMVAVL 480
  481 TVLLILYAFH CTWVTSEAYS SPSIVLSAKQ NDGSRVIFDD FREAYRWIGQ NTADDARIMS 540
  541 WWDYGYQLSA MANRTVLVDN NTWNNSHIAQ VGKAFASTEE DAYIQMKALD VDYVLVIFGG 600
  601 LTGYSSDDIN KFLWMVRIGG SCDPNIKEQD YLTNGQYRID KGASPTMLNS LMYKLSYYRF 660
  661 SEVHTDYQRP TGFDRVRNVE IGNKNFDLTY LEEAFTSVHW LVRVYKVKDF DNRA