YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60469535
Protein type:	Transmembrane
Type Confidence:	0.72
Topology Confidence:	0.56
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	6	0.56
Transmembrane Helix	7	27	0.62
Non-Cytoplasmic	28	641	0.98
Transmembrane Helix	642	661	0.83
Cytoplasmic	662	690	0.81
Transmembrane Helix	691	711	0.83
Non-Cytoplasmic	712	885	0.84
Transmembrane Helix	886	904	0.71
Cytoplasmic	905	910	0.71
Transmembrane Helix	911	930	0.65
Non-Cytoplasmic	931	935	0.60
Transmembrane Helix	936	959	0.68
Cytoplasmic	960	979	0.45
Transmembrane Helix	980	1014	0.73
Non-Cytoplasmic	1015	1048	0.63
Transmembrane Helix	1049	1071	0.88
Cytoplasmic	1072	1111	0.67
Transmembrane Helix	1112	1131	0.87
Non-Cytoplasmic	1132	1139	0.58
Transmembrane Helix	1140	1163	0.85
Cytoplasmic	1164	1173	0.64
Transmembrane Helix	1174	1196	0.86
Non-Cytoplasmic	1197	1223	0.72

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKSGLFLTYI TFLIIINIVN CGIFKFLEPV NYISSSKWRL SRDRSMNIGW NSEDHNDTIH  60
   61 SITTSSSGQY IISCSNDKLA KFHRVLMYPN LYPDWTHIYY GELKLRGYGN DDIENLKCLQ 120
  121 TLDGKQLLTL SVNKKENRVH LDTFTLIELD SIENRNPIIN IKSPQPPPPN INQLSNITNF 180
  181 NIIFPLDDYN EVFVNSSSLK SNLLKSHISK SSLKQLESNN HFSPYTTTLI NKLQKSPQGE 240
  241 QQHQQQQQQQ QQQQQQQQQQ QQQQGEQQQQ GEQQQPIFDL SLNGKHLLLS FDNKIKIQKV 300
  301 HNQSNDNGNQ KFKWEIITIE ARYKIQDVVF LPDNNENDNS ILVLLLDLEN DGDGSDGSDG 360
  361 GDDSAQNYHH HHQLEKQAKL ILYKNIDGKK WRPIELEISN LLLSTSLKII RNKALPQNDC 420
  421 ILNKQQQKQQ PIFVGFQDDR FTVHLGEIKN DKLILIKSLP LPFHQELPND PNHRVSIDFS 480
  481 KDSKMFSIQY PNSNTIYIYT RDDFDNEDNN NNNNNNNNNN NDDDDGSYSF RLSSIIDDLP 540
  541 IRSHGSVLLF NFKYNYLVTN FDGHLSFFRD FETQVSQCDP ASRTKSFYLP SPPLKSNITG 600
  601 SDRLELEQFG LLYLLKIGTN SSSSSLSSTS TSSSISQIQI KILMYTIFGY SLVILLQRLL 660
  661 IPLEVYYIGP FINKVLKKIS FTKINIKNIQ NILFYSIALV ILLLSFYEIT FQAAYTNDWP 720
  721 AHIHHIDQFL NPPPKNISIF NSISDSNTNI AFGGGSTTTT SNDEQLNYND NNNNNNEGSA 780
  781 ESDLNKLFPS IQYRQQKDDI DNSGSSSSSE EFFNSLNIKA PQGNSNFNSS NGGYQYFSKY 840
  841 LPSFLRDKFD FDYNNYMHYH GPNTYPAGFL YLYTLLYYIS NHGQSLQIFQ LIWAFLEFFN 900
  901 FILIKKICEK LSIPIILAVL PILSNRLHLY NVRVVINDFP STFLIHICVL LLISKRFKLF 960
  961 STLFSIIVSL KLNTIFHSPA ILFIFFNSLS IGQVILNLTI MAFIQLLVGL PFLMVNPVAY1020
 1021 FTNAYDFSRT LLWEKTRNFK FIGRLIYDST LFNILLLLLL IITILIFIYK YQLAVNEINR1080
 1081 LLKVVKNNTG GTINNENNNI GDEEIELKLK RIYILSFISV NFFAVVWARG LYTPFMCWYF1140
 1141 YTLPIILYFA KFSYTFIVLF WLAHEILFRF FKDFYIEMLG TFIFLNINLL ILIRLYNNFN1200
 1201 FTTSTKSTIP RIKTKTQQKI KTQ