YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60469836
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.74
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	39	0.97
Transmembrane Helix	40	61	0.90
Non-Cytoplasmic	62	118	0.91
Transmembrane Helix	119	141	0.92
Cytoplasmic	142	154	0.80
Transmembrane Helix	155	183	0.78
Non-Cytoplasmic	184	215	0.78
Transmembrane Helix	216	239	0.83
Cytoplasmic	240	249	0.65
Transmembrane Helix	250	268	0.96
Non-Cytoplasmic	269	311	0.82
Transmembrane Helix	312	332	0.92
Cytoplasmic	333	341	0.76
Transmembrane Helix	342	361	0.89
Non-Cytoplasmic	362	372	0.73
Transmembrane Helix	373	394	0.90
Cytoplasmic	395	440	0.81
Transmembrane Helix	441	459	0.74
Non-Cytoplasmic	460	649	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSKRKSQIT NTNGNGSDSK KKIETEYITR NKRINDTYKS TIFVFSLFFI SSILSAIYNR  60
   61 ILDCDEYMNY WEPTHYLLYN KGLQTWEYSP TYSLRSYAYL LLHAFMGRLL NPFSNGNKII 120
  121 LFYLIKIGIG FFTSIAQTIF YRGVKNMFGR EISRYTLIFM LFSPAFFLSG SNFLPTSFSM 180
  181 TTFMAAYGFW MLYQSSSTPL SALSPNESSN EAIYSVFLSA TSVFMGWPFV IVLVIPIALN 240
  241 LMIRNGFLKV FMWALLPVIA VFIPMILIDY QYYGKWVIAI YNIIAYNFTS NHSGGSQLYG 300
  301 IEDWPFYFIN SFVNYNIVFL FSLLTIPLLI IFRKWSGSLK NLTMVSIIYT LCPYYIWFGF 360
  361 MTYLPHKEER FLFVIYPFIA LAGSISFYIG LNILNAIILK ISGGGAGGSD IKNKKKNDDF 420
  421 KLKSKQQQHY NVNIYHGFVN FIKYLIIICF ILLSVSRIYS TYVNYTAPFN TLTHLNNNVL 480
  481 LNGNISISNF SKNNNILKSN NNNNNNKSVN ICIGKEWHRY PSNFFLPNDN NEIEFNLKFI 540
  541 ESDFKGHLPK PFSTLPNGTA IIPTNMNDQN KQEFDRYIKP NECSYIIDFD SPTQNEEHYV 600
  601 NDTSNWKVIY STKFLDAAAS TSSLYRAFWI PKLSNQKNVY NNYYILEKI