YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468737
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.77
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	96	0.98
Transmembrane Helix	97	117	0.89
Non-Cytoplasmic	118	131	0.84
Transmembrane Helix	132	152	0.91
Cytoplasmic	153	161	0.76
Transmembrane Helix	162	183	0.91
Non-Cytoplasmic	184	192	0.68
Transmembrane Helix	193	215	0.85
Cytoplasmic	216	225	0.70
Transmembrane Helix	226	246	0.94
Non-Cytoplasmic	247	264	0.85
Transmembrane Helix	265	287	0.93
Cytoplasmic	288	363	0.92
Transmembrane Helix	364	386	0.90
Non-Cytoplasmic	387	394	0.81
Transmembrane Helix	395	416	0.85
Cytoplasmic	417	427	0.84
Transmembrane Helix	428	451	0.88
Non-Cytoplasmic	452	459	0.74
Transmembrane Helix	460	480	0.92
Cytoplasmic	481	495	0.82
Transmembrane Helix	496	519	0.89
Non-Cytoplasmic	520	522	0.77

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGNEDDKELL EIQPMVNKMK SSSEFTNDST DGAVGNNNNN NNKTMCNFGI DEDYEIPIDS  60
   61 SIDSSNTTAF DNNNNNNSFI YTSKELELLK NKVDPKIAFC MTMLSIGCLS PFHCYLASLD 120
  121 YFNIIYPEKY KIASTFPFIY MTMITITFVI LIKYSDKLKH HIIILSGFSF YVIVLIIIPC 180
  181 LNLSKIGGSL TSYILTLLFI AITAIFDGMI QGSVFALASL FGSQYLLFCQ IGIGLAGVIV 240
  241 VITRLICKLS FSNTINDKVS LKIGSLVFFC TSSFLVICTL ITFILILKLP IGDIIKKKKT 300
  301 NQDYNENPIT LDGNNNNDNN NNNNNNENNN NENNNNNNNI NIEIDNFEEI YSPFKFTFKK 360
  361 NLKYSAMLSF LFTMTLFVFP GIVIQIKSDR IERSWWIFSL IAVYNIADSL GKALPLIVHK 420
  421 NDKRIPSVPW LWFISIGRCI FIVFFIIANY YSNIFTHESL IYLFLFIFAF SNGYISSIAL 480
  481 SQSPSTVPPK YRELSGIIMS SALNIGLLLG SVFNLIFVFA QK