YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	Y8206_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.85
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MYNKNNNNNN IIDDNDYDDD DDDYNYYNNN NYDYNENLIS KDTKKQKDLE KEPLSKSIAF  60
   61 ISIGTLTLLY VIVELGAALY VGSLTLLSDG FHNLSDVVSL VIAWWAQKAA KRDSDNFMSY 120
  121 GWARAEILGG LTNGCFLLSM SLYVALEAIP RFIRPEPMES GLIFMIVAGS GLAINILGTI 180
  181 VFACTGMSHA HSHGGGGHSH GGGGGHSHGA EKEKKKEKHG HSHDGADKEK KKEKHGHGHS 240
  241 HSTATTAVGI NSEEHNHDDH DHHDHSEESH GHSHGGEKKK EKKHGHSHSH GGGAAEGINI 300
  301 NDEHDHDHEG HHDHSEENHG HSHGGSEKKK EKHGHGHSHD GGVEKKKEKH GHSHDGVEKK 360
  361 KKKKKSSGTC LGMDLNMFGV FLHFLGDAIS SLFVLITGAV IHFTHGKWTE YIDPAVSLII 420
  421 VIMIAATSAP LVKRCSMILL QKVPDDIDLD SIRYKIAKVE GVVSQHDLHV WQLVDGMTIA 480
  481 SVHVGIEQGR EFQSIASKLR KIFHKEGIHS TSIQPEFLPI NSFTGGATSD PNFCIQNCVD 540
  541 DCEEEWCCKK SADRIRMRNF NSKNSNIVDI NDI

Type	Start	End	Confidence
Cytoplasmic	1	57	0.98
Transmembrane Helix	58	81	0.85
Non-Cytoplasmic	82	89	0.70
Transmembrane Helix	90	106	0.85
Cytoplasmic	107	126	0.76
Transmembrane Helix	127	146	0.94
Non-Cytoplasmic	147	161	0.78
Transmembrane Helix	162	184	0.93
Cytoplasmic	185	379	0.95
Transmembrane Helix	380	403	0.85
Non-Cytoplasmic	404	410	0.86
Transmembrane Helix	411	432	0.91
Cytoplasmic	433	573	0.96