YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	gi\|60468626
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.72
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	166	0.99
Transmembrane Helix	167	186	0.95
Non-Cytoplasmic	187	202	0.92
Transmembrane Helix	203	225	0.93
Cytoplasmic	226	234	0.86
Transmembrane Helix	235	254	0.97
Non-Cytoplasmic	255	261	0.84
Transmembrane Helix	262	283	0.91
Cytoplasmic	284	308	0.82
Transmembrane Helix	309	328	0.90
Non-Cytoplasmic	329	340	0.75
Transmembrane Helix	341	363	0.79
Cytoplasmic	364	456	0.73
Transmembrane Helix	457	479	0.78
Non-Cytoplasmic	480	497	0.68
Transmembrane Helix	498	520	0.72
Cytoplasmic	521	542	0.82
Transmembrane Helix	543	565	0.92
Non-Cytoplasmic	566	575	0.82

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MENNNLNITI DPGLTNNIEN YNNNNINNNN INNNNNNNNN NNNNNNNNNN NNNNNNEEIK  60
   61 NEIKISNDQN LIGSPYSNLG MSTEDIMSNS SMVGSCERLR ISKMDSSVCS SYNEDKLKNF 120
  121 EDSETKGEEN EKNGKMKEMD INTPNEMEDG EIGWRGLKTL RLIAERYLFG IIVAAVVGLL 180
  181 IILLSLPDWS NGPAGFNEKT YNIFFIISSI FFGPLYVVGG FIASYGIERV KDARIIIYGT 240
  241 SIGIGFIVLY VVFAVKEIRY WYYYLDVVSV VLIFSFVEVI FSFRMSNVIQ KAERSVVCTM 300
  301 KSVWTAYNYA APDIVVTLFS LVYMFFLIPV YLTIENSIFR LGWRLVIHPI YWTVIVMIAR 360
  361 QFLDRDISTT DIMLNTNIVL HTFFHHQTLG KIFVFTFDDS GSTQLTYIGI CVSAIEDIFL 420
  421 RSIALKRDEW FFTFLYDKSR AVKQVYSQES LQLRAAILNI QTALDFSGLI TAPLFVFMFS 480
  481 KHKHVFHVLE GSTVVPLTLF IQSLLSIFLD FGVEITCTYI ETKYYRLPIK TTWDWMKSHK 540
  541 LSFMTWLIYG SCTMGLLAMI WLMAMIPRVG QSVYN