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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60462613
Protein type: Transmembrane
Type Confidence: 0.73
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSNKLSGIYS ALDSGNNKQS LKLCNALLTK KKDENTNIVK VLKAITLIKL GENEEAIKCA  60
   61 DEVAFIGHYN ETLLSNLNYF YKSVQQGYKM TKVYEASVKA YPKNENLAEG LFLAYAKVRD 120
  121 YKQQQQVILD LQKNFPSHQH SLWYLMTILS MVHDNPSNQL FIGLSQKLAE KLVEEGKIKT 180
  181 SEHLYMYETV LDIQGKTSEH LNLIKGKLGE LYNVATERLK ILGDLNQKLG NHQEAANNYS 240
  241 EILTKYEPDE WSCYMGYFDN IWSLNDISKI DDAKQFIQNI QSQQTSKHLL RGPLLAEIEI 300
  301 YYRLLTTTTT ANGNPAANID GPVFNKFIEL ILNYFTKFGT KPVLYSDLKK YLQFIETKKS 360
  361 IEQRKEIMDR IYKLVSLDKD EANHISQLSN YHKLSRVLGL QLEMSIEESI KIIKEILEEY 420
  421 QYNTKKFPLA IESERYPGDD LILICHFLLM DQYEKTKQVS LLLESAAILE FAHSISTKNY 480
  481 QFNLYLLSLY FELGAHQLAS NHFKILNIKN IQYDTLGHLV ADQFIREPTC FSNAINAFEK 540
  541 SAKFYNENES TADYVAACYQ NGCYSKITEI QKFQVKVANS FQKSVYETER QLFNFMLIRF 600
  601 KKLPNANFTA SQFVEICKSQ ISSTDPINFD CSNEVLNALS FNHDNTIFDK FNPTTTSNSD 660
  661 SIKQVENQIQ GITSLYFENT EKSTLLLQLT YRRQILNILY LISTQSPIDL NQFNQLLISL 720
  721 ESTTTKLNSI NSHKIDNLTR ISTLNNFKLL NLILNLLKEF NEEKLKQVKE LLELINNEIT 780
  781 EIVKVLSDNI RESVVLGNSL NSLSRSSRMV VSSFIEPITW FSFIALLVNS ALPGKRAKKK 840
  841 EEYHTTIRTD LETLVKKLSD DSLNLSNIIN EKSLSKLSLT EDDNNKSTIL ETLNTQSIAK 900
  901 NVSENSIKSV TELQEYLNSM KTLLTFSINN TNNTTNA

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle