YRC Public Data Repository - View Philius Transmembrane Prediction Details

Prediction Overview

Protein:	CLCF_DICDI
Protein type:	Transmembrane
Type Confidence:	0.99
Topology Confidence:	0.69
From Publication:	Reynolds et al. (2008)

Predicted Protein Segments [Show List]:

Predicted Protein Segments [Hide List]:

Type	Start	End	Confidence
Cytoplasmic	1	65	0.99
Transmembrane Helix	66	89	0.91
Non-Cytoplasmic	90	108	0.94
Transmembrane Helix	109	130	0.93
Cytoplasmic	131	150	0.85
Transmembrane Helix	151	169	0.93
Non-Cytoplasmic	170	215	0.64
Transmembrane Helix	216	240	0.88
Cytoplasmic	241	250	0.49
Transmembrane Helix	251	271	0.69
Non-Cytoplasmic	272	292	0.77
Transmembrane Helix	293	316	0.91
Cytoplasmic	317	332	0.75
Transmembrane Helix	333	356	0.82
Non-Cytoplasmic	357	391	0.78
Transmembrane Helix	392	411	0.89
Cytoplasmic	412	420	0.55
Transmembrane Helix	421	444	0.82
Non-Cytoplasmic	445	452	0.71
Transmembrane Helix	453	474	0.84
Cytoplasmic	475	485	0.63
Transmembrane Helix	486	506	0.87
Non-Cytoplasmic	507	809	0.75

Prediction Image Map

(Place mouse over segments for confidence values.)

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSTSKYSKMI SSKHGYKKTR IKNNTSDSDL FNLVMPKADV VGFKSKQGGI SRQAISWAKF  60
   61 ARLNNFYIWL FLAAVGLLGS IYLVAVDLIF KYVVFSWREA FMSLTENYFL QYLSFIAWTV 120
  121 ALATGSCFII KKICPAAVGS GIPDLKSIFS GFWNPFVVAP MVLLWKTIGL LLSYGSGLSI 180
  181 GKEGPYIHIS ATLANTLLSI KPFKSIAQND TQRSQLLAAC CALGVAATFG SPIGGVLFSI 240
  241 EATGTFYLIS NYWRAFFTAT VGAVGIKILL SNPSNDLLES FRTHFADLNL ASAQLIAFII 300
  301 LGVLCGLLAS LFISLYTKIY NWKKHNAELF KKITPFGEVI IVAAATAILS FPLKFLRLDH 360
  361 ATAVHTMFTA TPDSDNSEVL SELAVWTDSM PFNHGIILAC FLYVVVKLVL TAVSITLPIP 420
  421 YGIYIPLFAI GSAVGRFVGE LMLVLFPNSK EIYPTGYAVV GAAALCGGAT RTVSSAMIIL 480
  481 ELTNDLTYMV PVLLGVVLSC GIGNLLNHSI YDCFLKNKNL PYLPFYKAKS DSLIARDVMK 540
  541 RDLYYVCQNT TLSQISNLLK RVDEHSIPVV SSDNDLQLIG TISTTTLEEV IAYHERLHSY 600
  601 SKSPLSLSDN GIDINDNDNN DNINNNQNNN NNNNNNNNNN NSNNQNNSLV SEAIEMNVLS 660
  661 DSDNDENNNL IPNIPINDNN IIIQNNIRNN NNNNFSDNNN NYNNNNYNNN NNNNNDNNTN 720
  721 NDNNINNNSN DINESISEET TIDLVQMELQ NPWVVIDSSP FQIQETMPVR KIVFMFMMLG 780
  781 GNILYVTNKG KLTGVVAKTE LVHQNNNKH