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View Philius Transmembrane Prediction Details

Prediction Overview

Protein: gi|60475613
Protein type: Transmembrane
Type Confidence: 0.66
Topology Confidence: 0.63
From Publication: Reynolds et al. (2008)


Predicted Protein Segments [Show List]:

Prediction Image Map

(Place mouse over segments for confidence values.)


Philius confidence legend

Prediction Sequence Map

Legend: Transmembrane Helix, Non-Cytoplasmic, Cytoplasmic, Signal Peptide

(Place mouse over sequence for confidence values.)

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKCISNITSS SRKQKFLILF ILVASSILLM FYDEFSFITV FNKDNNNNNN NNNNYRTNQF  60
   61 KDNDNIFYTN RILEETRNSD VVIFLWDPSS ERDDWTGILK SNNLVTQQQI DDYNNKKSLF 120
  121 TSTTSTTSHP YTSSRSSTST SSRSSTSTSS RSSTSGGRSS SGGSSTSSGG SSTSSGSSST 180
  181 TSSRGSSTTS RSSSTTGIRG GSSTTQQTEV EAAAAVSGQL SIDFNQKSLS IKLNEVFNEK 240
  241 NKCSCSCRFT NLQEEIVESH LILFDPVYLH KDNWKRSPLK LPEKHSHQKF GLFHYNSKSQ 300
  301 YSILSNKPYN NLMDIDISYL NSDHNLDITL ACPPNSSFTL DDTSKLLLKK HKDWDKRNNS 360
  361 AIFISSNCVD GLSLSRTNLV KELSKIIKIE SLGNCLNDNT VNIKSKEELG SIYSRIEYNM 420
  421 EIYKKAKFVI CFENENSTNY VTEKVYTALY AGAIPIWMGA KNIDQYVPTG SIINGNEFNN 480
  481 INEIGEHIKS IIDGKIDYKR YFKWKDDNDN QSLESKVIDK LKRCINTVDM KCKICETIYK 540
  541 SIEQSDRDYL SSTVAAKNYH YVSNNIGYYT PQFVSMKGLG DHIFVNRNED TCKNCFNLDD 600
  601 HYTLMAWVKP STFSDQRIID KNHAGTISGY NFDIQKTSGG RGVARLCAGT ACFESFKSIP 660
  661 NDLWSHVAVV FSCNNLDVQK NRVTFYINGV FNAEFDNFKP TKINDFPLVI GKSGKKTEST 720
  721 SYHGMIDDIM IFNISLTSDD IKYVLSSKPN LSTFKFANDL QLFYDFDYNP NNPKSHDRNI 780
  781 VRDKSIYKND GTFASGSSDD YSEKITSISK EISFNKKL

YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle